SMTL ID : 5dub.1 (1 other biounit)

Context-independent anti-hypusine antibody FabHpu98 in complex with deoxyhypusine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: V.168, R.169, T.170 Chain B: T.166, N.176 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.168, A:T.170, B:N.176 EDO.2: 6 residues within 4Å: Chain A: T.87, L.113, T.115, P.152, E.153, Y.181 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.115, A:E.153 Water bridges: A:E.153 EDO.3: 5 residues within 4Å: Chain A: P.128, K.211, T.212, V.213, A.214 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.212, A:A.214, A:A.214 EDO.4: 4 residues within 4Å: Chain A: K.148, Q.176, S.177, S.178 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.148, A:K.148, A:S.177, A:S.178 EDO.10: 5 residues within 4Å: Chain B: P.116, T.117, V.118, L.119, V.205 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.116, B:V.118 EDO.11: 4 residues within 4Å: Chain B: V.146, V.148, N.163, K.165 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.148, B:K.165, B:K.165 EDO.12: 2 residues within 4Å: Chain B: N.98, N.99 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.98, B:N.99 Water bridges: B:N.98 EDO.13: 5 residues within 4Å: Chain A: G.43 Chain B: S.9, Y.87, G.103, G.104 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.9, B:Y.87, B:E.106 EDO.14: 3 residues within 4Å: Chain B: Q.187, S.190, H.191 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.191 Water bridges: B:Q.187 EDO.15: 5 residues within 4Å: Chain B: D.28, K.30, R.31, S.67, G.68 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.28, B:R.31, B:G.68

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: K.208, D.210 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.199, A:D.210 Water bridges: A:K.208 Salt bridges: A:K.208 SO4.6: 2 residues within 4Å: Chain A: G.167, R.169 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.169 SO4.7: 5 residues within 4Å: Chain A: R.9, L.10, V.11, T.12, T.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.12 Salt bridges: A:R.9 SO4.8: 2 residues within 4Å: Chain A: T.71, S.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.71, A:S.72 SO4.9: 4 residues within 4Å: Chain A: K.122, G.123, T.205, T.207 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.123, A:T.205, A:T.207 SO4.16: 3 residues within 4Å: Chain A: N.60 Chain B: A.1, N.98 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:A.1, B:N.98, B:N.98, A:N.60 SO4.17: 3 residues within 4Å: Chain B: K.39, Q.42, D.81 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.42, B:Q.42 Salt bridges: B:K.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhai, Q. et al., Structural Analysis and Optimization of Context-Independent Anti-Hypusine Antibodies. J.Mol.Biol. (2016)

Release Date

2016-01-20

Peptides

Fab Hpu98 Heavy chain: A
Fab Hpu98 Light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fab Hpu98 Heavy chain

Fab Hpu98 Light chain

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