- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 4 residues within 4Å:- Chain A: L.273, N.276, N.277, R.364
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.276, A:N.277
- Water bridges: A:R.364
- Salt bridges: A:R.364
SO4.3: 3 residues within 4Å:- Chain A: L.193, D.194, K.226
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.192, A:D.194
- Salt bridges: A:K.226
SO4.4: 5 residues within 4Å:- Chain A: S.443, K.445, G.464, K.465, S.466
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.443, A:S.466
- Water bridges: A:S.443, A:G.464
SO4.5: 5 residues within 4Å:- Chain A: N.444, K.445, G.446, V.447, K.461
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.446, A:V.447
- Salt bridges: A:K.461
SO4.6: 5 residues within 4Å:- Chain A: F.137, L.138, G.139, Q.354
- Ligands: 5NM.7
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:F.137, A:G.139, A:Q.354
- Water bridges: A:F.140, A:F.140
SO4.9: 4 residues within 4Å:- Chain B: L.273, N.276, N.277, R.364
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.276, B:N.277
- Water bridges: B:R.364
- Salt bridges: B:R.364
SO4.10: 3 residues within 4Å:- Chain B: L.193, D.194, K.226
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.192, B:D.194
- Salt bridges: B:K.226
SO4.11: 5 residues within 4Å:- Chain B: S.443, K.445, G.464, K.465, S.466
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.443, B:S.466
- Water bridges: B:S.443, B:G.464
SO4.12: 5 residues within 4Å:- Chain B: N.444, K.445, G.446, V.447, K.461
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.446, B:V.447
- Salt bridges: B:K.461
SO4.13: 5 residues within 4Å:- Chain B: F.137, L.138, G.139, Q.354
- Ligands: 5NM.14
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:F.137, B:G.139, B:Q.354
- Water bridges: B:F.140, B:F.140
SO4.16: 4 residues within 4Å:- Chain C: L.273, N.276, N.277, R.364
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.276, C:N.277
- Water bridges: C:R.364
- Salt bridges: C:R.364
SO4.17: 3 residues within 4Å:- Chain C: L.193, D.194, K.226
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:V.192, C:D.194
- Salt bridges: C:K.226
SO4.18: 5 residues within 4Å:- Chain C: S.443, K.445, G.464, K.465, S.466
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:S.443, C:S.466
- Water bridges: C:S.443, C:G.464
SO4.19: 5 residues within 4Å:- Chain C: N.444, K.445, G.446, V.447, K.461
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.446, C:V.447
- Salt bridges: C:K.461
SO4.20: 5 residues within 4Å:- Chain C: F.137, L.138, G.139, Q.354
- Ligands: 5NM.21
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:G.139, C:Q.354
- Water bridges: C:F.140, C:F.140
- 3 x 5NM: 3-[[5-bromanyl-1-(3-methylsulfonylpropyl)benzimidazol-2-yl]methyl]-1-cyclopropyl-imidazo[4,5-c]pyridin-2-one(Non-covalent)
5NM.7: 15 residues within 4Å:- Chain A: F.137, F.140, M.396, T.397, S.398, D.486, F.488, D.489
- Chain B: F.488
- Chain C: F.140, F.488, D.489
- Ligands: SO4.6, 5NM.14, 5NM.21
10 PLIP interactions:3 interactions with chain B, 5 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: B:F.488, B:F.488, A:F.488, A:F.488, A:F.488, C:F.140
- pi-Stacking: B:F.488, A:F.140, C:F.488
- Halogen bonds: A:T.397
5NM.14: 15 residues within 4Å:- Chain A: F.140, F.488, D.489
- Chain B: F.137, F.140, M.396, T.397, S.398, D.486, F.488, D.489
- Chain C: F.488
- Ligands: 5NM.7, SO4.13, 5NM.21
10 PLIP interactions:5 interactions with chain B, 2 interactions with chain A, 3 interactions with chain C- Hydrophobic interactions: B:F.488, B:F.488, B:F.488, A:F.140, C:F.488, C:F.488
- pi-Stacking: B:F.140, A:F.488, C:F.488
- Halogen bonds: B:T.397
5NM.21: 15 residues within 4Å:- Chain A: F.488
- Chain B: F.140, F.488, D.489
- Chain C: F.137, F.140, M.396, T.397, S.398, D.486, F.488, D.489
- Ligands: 5NM.7, 5NM.14, SO4.20
10 PLIP interactions:2 interactions with chain B, 5 interactions with chain C, 3 interactions with chain A- Hydrophobic interactions: B:F.140, C:F.488, C:F.488, C:F.488, A:F.488, A:F.488
- pi-Stacking: B:F.488, C:F.140, A:F.488
- Halogen bonds: C:T.397
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Battles, M.B. et al., Molecular mechanism of respiratory syncytial virus fusion inhibitors. Nat.Chem.Biol. (2016)
- Release Date
- 2015-12-09
- Peptides
- Fusion glycoprotein F0: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
FC
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 3 x 5NM: 3-[[5-bromanyl-1-(3-methylsulfonylpropyl)benzimidazol-2-yl]methyl]-1-cyclopropyl-imidazo[4,5-c]pyridin-2-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Battles, M.B. et al., Molecular mechanism of respiratory syncytial virus fusion inhibitors. Nat.Chem.Biol. (2016)
- Release Date
- 2015-12-09
- Peptides
- Fusion glycoprotein F0: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
FC
F