- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- monomer
- Ligands
- 1 x 5ML: 3-methyl-~{N}-[2-(4-methylpiperazin-1-yl)-5-quinolin-3-yl-phenyl]benzamide(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 6 residues within 4Å:- Chain A: Y.169, K.237, Y.238, C.239, I.283
- Ligands: 5ML.1
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:C.239
EDO.5: 4 residues within 4Å:- Chain A: Y.238, D.280, L.299, E.300
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.300
- Water bridges: A:E.300, A:E.300
EDO.6: 5 residues within 4Å:- Chain A: V.9, G.249, K.250, W.251, N.265
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.250
- Water bridges: A:K.250
EDO.7: 5 residues within 4Å:- Chain A: K.16, F.17, A.52, Y.53, L.307
No protein-ligand interaction detected (PLIP)EDO.8: 6 residues within 4Å:- Chain A: T.18, G.277, T.279, D.302, T.304, K.306
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.277, A:K.306
EDO.9: 8 residues within 4Å:- Chain A: P.33, W.73, S.74, S.75, F.115, N.116, P.117, S.119
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.74
- Water bridges: A:W.73
EDO.10: 4 residues within 4Å:- Chain A: P.146, R.174, W.176, C.183
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.146
- Water bridges: A:C.183
EDO.11: 5 residues within 4Å:- Chain A: Y.206, L.218, L.227, K.228, Q.267
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.267
- Water bridges: A:K.228, A:K.228
- 13 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.12: 1 residues within 4Å:- Ligands: 5ML.1
No protein-ligand interaction detected (PLIP)UNX.13: 3 residues within 4Å:- Chain A: K.101, V.136, K.137
No protein-ligand interaction detected (PLIP)UNX.14: 3 residues within 4Å:- Chain A: G.21, K.48, F.57
No protein-ligand interaction detected (PLIP)UNX.15: 2 residues within 4Å:- Chain A: D.213, N.214
No protein-ligand interaction detected (PLIP)UNX.16: 2 residues within 4Å:- Chain A: D.177, L.184
No protein-ligand interaction detected (PLIP)UNX.17: 1 residues within 4Å:- Chain A: N.292
No protein-ligand interaction detected (PLIP)UNX.18: 3 residues within 4Å:- Chain A: C.99, K.101, T.102
No protein-ligand interaction detected (PLIP)UNX.19: 3 residues within 4Å:- Chain A: Q.118, D.160, S.162
No protein-ligand interaction detected (PLIP)UNX.20: 2 residues within 4Å:- Chain A: V.195, T.211
No protein-ligand interaction detected (PLIP)UNX.21: 2 residues within 4Å:- Chain A: P.146, R.174
No protein-ligand interaction detected (PLIP)UNX.22: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)UNX.23: 1 residues within 4Å:- Chain A: E.129
No protein-ligand interaction detected (PLIP)UNX.24: 2 residues within 4Å:- Chain A: F.244, C.287
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- DOMBROVSKI, L. et al., Crystal structure of human WDR5 in complex with compound 9h. to be published
- Release Date
- 2015-11-04
- Peptides
- WD repeat-containing protein 5: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- monomer
- Ligands
- 1 x 5ML: 3-methyl-~{N}-[2-(4-methylpiperazin-1-yl)-5-quinolin-3-yl-phenyl]benzamide(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 13 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- DOMBROVSKI, L. et al., Crystal structure of human WDR5 in complex with compound 9h. to be published
- Release Date
- 2015-11-04
- Peptides
- WD repeat-containing protein 5: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A