SMTL ID : 5eir.1

Co-crystal structure of eIF4E with nucleotide mimetic inhibitor.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 5O8: ~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-6-oxidanylidene-7-(phenylmethyl)-1~{H}-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-1,1,1-tris(fluoranyl)methanesulfonamide(Non-covalent)

5O8.1: 9 residues within 4Å: Chain A: W.56, M.101, W.102, E.103, R.112, R.157, W.166, H.200 Ligands: SO4.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.102, A:W.102, A:W.166 Hydrogen bonds: A:W.102 Salt bridges: A:E.103 pi-Stacking: A:W.56, A:W.56, A:W.56, A:W.102, A:W.102

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: N.155, R.157 Ligands: 5O8.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.155 Water bridges: A:D.90, A:R.157, A:R.157 Salt bridges: A:R.157, A:K.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Soukarieh, F. et al., Design of nucleotide-mimetic and non-nucleotide inhibitors of the translation initiation factor eIF4E: Synthesis, structural and functional characterisation. Eur.J.Med.Chem. (2016)

Release Date

2016-09-07

Peptides

Eukaryotic translation initiation factor 4E: A
Eukaryotic translation initiation factor 4 gamma 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Eukaryotic translation initiation factor 4E

Eukaryotic translation initiation factor 4 gamma 1

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