SMTL ID : 5ezz.1

CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH (4S)-4-[3-(5-chloro-3-pyridyl)phenyl]-4-[4-(difluoromethoxy)-3-methyl-phenyl]-5H-oxazol-2-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 5T6: (4~{S})-4-[4-[bis(fluoranyl)methoxy]-3-methyl-phenyl]-4-[3-(5-chloranylpyridin-3-yl)phenyl]-5~{H}-1,3-oxazol-2-amine(Non-covalent)

5T6.1: 19 residues within 4Å: Chain A: G.16, Q.17, G.18, D.37, G.39, S.40, N.42, V.74, Y.76, W.81, F.113, I.115, W.120, I.123, R.133, D.233, S.234, G.235, T.236 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.74, A:Y.76, A:F.113, A:W.120, A:I.123 Hydrogen bonds: A:D.37 Halogen bonds: A:N.42, A:S.234

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 4 residues within 4Å: Chain A: D.9, L.11, R.12, V.175 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.9

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: V.146, T.149 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.146 NA.4: 2 residues within 4Å: Chain A: H.186, Y.189 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.186 Water bridges: A:Y.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhn, B. et al., A Real-World Perspective on Molecular Design. J.Med.Chem. (2016)

Release Date

2016-02-24

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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