SMTL ID : 5fq9.1

Crystal structure of the OXA10 with 1C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x C6S: (3R)-3-(cyclohexylcarbonylamino)-2-oxidanyl-3,4-dihydro-1,2-benzoxaborinine-8-carboxylic acid(Covalent)

C6S.1: 13 residues within 4Å: Chain A: A.48, S.49, K.52, M.81, W.84, S.97, V.99, T.188, G.189, F.190, S.191, G.192, R.232 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.84, A:V.99, A:F.190, A:F.190 Hydrogen bonds: A:S.49, A:S.97, A:T.188, A:F.190, A:F.190, A:F.190 Salt bridges: A:K.187, A:R.232 C6S.7: 14 residues within 4Å: Chain B: A.48, S.49, K.52, M.81, W.84, S.97, V.99, K.187, T.188, G.189, F.190, S.191, G.192, R.232 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:W.84, B:V.99, B:F.190, B:F.190, B:F.190 Hydrogen bonds: B:S.49, B:S.97, B:S.97, B:F.190, B:F.190, B:F.190 Water bridges: B:T.188 Salt bridges: B:K.187, B:R.232

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: T.89, R.91, G.92 Chain B: A.179, P.180, E.181, Y.182, E.209, E.211 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Water bridges: A:R.91, A:G.92 Hydrogen bonds: B:A.179, B:Y.182, B:E.209, B:E.211 GOL.3: 6 residues within 4Å: Chain A: E.111, I.128, S.129, G.130, G.131, I.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.131, A:G.131 Water bridges: A:I.132 GOL.4: 7 residues within 4Å: Chain A: K.120, F.121, S.122, E.150, F.151, S.154, L.160 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.120, A:S.122, A:E.150, A:S.154 Water bridges: A:S.154 GOL.8: 6 residues within 4Å: Chain B: L.25, K.27, S.32, C.33, A.34, Y.215 1 PLIP interactions: 1 interactions with chain B Water bridges: B:C.33

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 5 residues within 4Å: Chain A: E.181, Y.182, E.209, E.211 Chain B: T.89 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:T.89 Hydrogen bonds: B:T.89 Water bridges: B:T.89

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 4 residues within 4Å: Chain A: R.79, A.80, W.84, P.100 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 4 residues within 4Å: Chain B: G.2, C.26, C.33, E.153 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.2, B:E.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brem, J. et al., Structural basis of metallo-beta-lactamase, serine-beta-lactamase and penicillin-binding protein inhibition by cyclic boronates. Nat Commun (2016)

Release Date

2016-08-17

Peptides

BETA-LACTAMASE OXA-10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BETA-LACTAMASE OXA-10

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