SMTL ID : 5g08.1

Crystal structure of Drosophila NCS-1 bound to chlorpromazine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.73, N.75, D.77, A.79, E.84 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.73, A:D.77, A:A.79, A:E.84, H2O.4 CA.2: 5 residues within 4Å: Chain A: D.156, N.158, D.160, R.162, E.167 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.156, A:D.160, A:R.162, A:E.167, H2O.6 CA.3: 5 residues within 4Å: Chain A: D.109, D.111, D.113, Y.115, E.120 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.109, A:Y.115, A:E.120, A:E.120, H2O.5

1 x Z80: 3-(2-chloro-10H-phenothiazin-10-yl)-N,N-dimethylpropan-1-amine(Non-covalent)

Z80.4: 7 residues within 4Å: Chain A: Y.52, F.72, F.85, T.92, W.103 Ligands: GOL.5, EDO.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.85, A:T.92, A:W.103

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: W.30, F.85, L.89 Ligands: Z80.4, EDO.7 No protein-ligand interaction detected (PLIP) GOL.6: 5 residues within 4Å: Chain A: T.17, T.18, D.19, T.20, Y.21 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.17 Water bridges: A:D.19, A:D.19, A:D.19, A:E.99

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 4 residues within 4Å: Chain A: D.37, I.51 Ligands: Z80.4, GOL.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mansilla, A. et al., Interference of the complex between NCS-1 and Ric8a with phenothiazines regulates synaptic function and is an approach for fragile X syndrome. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-01-25

Peptides

FREQUENIN 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FREQUENIN 2

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