SMTL ID : 5ggp.2 (1 other biounit)

Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-beta1,2-Man-peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MAN- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose(Non-covalent)

MAN-NAG.1: 9 residues within 4Å: Chain A: R.43, Y.66, D.93, E.94, R.121, W.148 Chain B: T.4, P.5 Ligands: NA.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.121, A:R.121, A:R.43, A:R.121, A:W.148

3 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: P.68, H.69, H.98, K.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.69, A:K.100 NA.3: 3 residues within 4Å: Chain A: R.121, S.146 Ligands: MAN-NAG.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.121, A:S.146 NA.4: 3 residues within 4Å: Chain A: V.81, A.82, R.85 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.82, A:R.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuwabara, N. et al., Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-08-10

Peptides

Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1: A
10-mer Peptide from Dystroglycan: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

10-mer Peptide from Dystroglycan

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