SMTL ID : 5gtf.2 (3 other biounits)

Crystal structure of onion lachrymatory factor synthase (LFS) containing glycerol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain A: L.47, M.51, L.54, R.71, F.84, E.88, Y.102, F.104, Y.114, W.133, W.155 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.71, A:Y.102, A:Y.114, A:Y.114 GOL.2: 4 residues within 4Å: Chain A: L.93, D.94, N.95, K.96 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.94, A:N.95, A:K.96 Water bridges: A:D.94, A:D.94 GOL.3: 4 residues within 4Å: Chain A: I.140, E.141, G.142, M.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.142, A:M.143, A:M.143

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: P.124, E.125 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.125 Water bridges: A:H.126 SO4.5: 1 residues within 4Å: Chain A: R.130 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arakawa, T. et al., Dissecting the Stereocontrolled Conversion of Short-Lived Sulfenic Acid by Lachrymatory Factor Synthase. Acs Catalysis (2020)

Release Date

2017-08-23

Peptides

Lachrymatory-factor synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Lachrymatory-factor synthase

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