SMTL ID : 5gtg.1 (7 other biounits)

Crystal structure of onion lachrymatory factor synthase (LFS) containing 1,2-propanediol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 5 residues within 4Å: Chain A: D.43, I.45, N.46, A.64, N.65 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.65

1 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.2: 8 residues within 4Å: Chain A: L.47, M.51, R.71, V.73, F.84, E.88, Y.102, W.133 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.47, A:V.73, A:F.84 Hydrogen bonds: A:Y.102, A:Y.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arakawa, T. et al., Dissecting the Stereocontrolled Conversion of Short-Lived Sulfenic Acid by Lachrymatory Factor Synthase. Acs Catalysis (2020)

Release Date

2017-08-23

Peptides

Lachrymatory-factor synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lachrymatory-factor synthase

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