SMTL ID : 5h94.2 (1 other biounit)

Crystal structure of Swine MHC CLASSI for 1.48 angstroms

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- MET- ASN- THR- GLN- PHE- THR- ALA- VAL: Nonapeptide from Influenza A virus HA protein(Non-covalent)

LYS-MET-ASN-THR-GLN-PHE-THR-ALA-VAL.1: 28 residues within 4Å: Chain A: L.5, Y.7, Y.9, E.45, Y.59, R.62, E.63, I.66, S.67, N.70, T.73, V.76, N.77, N.80, L.81, Y.84, F.95, Y.99, Y.116, T.143, K.146, W.147, W.152, E.156, Y.159, L.163, S.167, Y.171 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.59, A:V.76, A:L.81, A:F.95, A:T.143, A:W.147, A:Y.159, A:L.163 Hydrogen bonds: A:Y.7, A:R.62, A:R.62, A:E.63, A:N.77, A:N.80, A:Y.84, A:Y.99, A:Y.99, A:E.156, A:S.167, A:Y.171 Water bridges: A:E.55, A:Y.59, A:N.70, A:H.114, A:K.146, A:K.146, A:E.170 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, S. et al., Structural and Biochemical Analyses of Swine Major Histocompatibility Complex Class I Complexes and Prediction of the Epitope Map of Important Influenza A Virus Strains. J.Virol. (2016)

Release Date

2016-05-18

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

MHC class I antigen

Beta-2-microglobulin

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