SMTL ID : 6kwl.1

Crystal structure of pSLA-1*0401(R156A) complex with FMDV-derived epitope MTAHITVPY

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MET- THR- ALA- HIS- ILE- THR- VAL- PRO- TYR: peptide(Non-covalent)

MET-THR-ALA-HIS-ILE-THR-VAL-PRO-TYR.1: 31 residues within 4Å: Chain A: L.5, Y.7, Y.9, M.45, Y.59, R.62, E.63, N.66, E.69, T.70, T.73, Y.74, G.77, T.80, L.81, Y.84, L.95, S.97, Y.99, R.114, D.116, T.143, K.146, W.147, E.152, R.155, Y.159, L.163, S.167, R.170, Y.171 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:Y.7, A:E.69, A:Y.74, A:L.81, A:L.95, A:Y.99, A:W.147, A:Y.159 Hydrogen bonds: A:Y.7, A:R.62, A:R.62, A:E.63, A:N.66, A:T.70, A:T.73, A:Y.74, A:S.97, A:Y.99, A:Y.99, A:T.143, A:R.155, A:Y.159, A:S.167, A:Y.171, A:Y.171 Water bridges: A:Y.9, A:T.70, A:T.70, A:Y.74, A:T.80, A:R.114, A:E.152, A:E.152 Salt bridges: A:K.146 pi-Stacking: A:Y.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, X. et al., Peptidomes and Structures Illustrate Two Distinguishing Mechanisms of Alternating the Peptide Plasticity Caused by Swine MHC Class I Micropolymorphism. Front Immunol (2021)

Release Date

2020-09-09

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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