SMTL ID : 8gqw.2 (1 other biounit)

The Crystal Structures of a Swine SLA-2*HB01 Molecules Complexed with a CTL epitope from Asia1 serotype of Foot-and-mouth disease virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- LEU- LEU- ARG- THR- ALA- THR- TYR- TYR: Hu64(Non-covalent)

ALA-LEU-LEU-ARG-THR-ALA-THR-TYR-TYR.1: 30 residues within 4Å: Chain A: L.5, Y.7, Y.9, M.45, E.63, I.66, S.67, T.70, N.73, Y.74, V.76, D.77, T.80, L.81, Y.84, I.95, R.97, Y.99, R.114, D.116, Y.123, T.143, K.146, W.147, E.152, E.156, Y.159, R.163, W.167, Y.171 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.9, A:I.66, A:T.70, A:Y.74, A:V.76, A:D.77, A:L.81, A:Y.99, A:Y.123, A:Y.159, A:Y.159, A:W.167 Hydrogen bonds: A:E.63, A:Y.74, A:D.77, A:Y.84, A:Y.99, A:Y.99, A:R.114, A:D.116, A:D.116, A:E.152, A:Y.171, A:Y.171 Water bridges: A:T.70, A:D.77, A:D.77, A:R.97 Salt bridges: A:K.146 pi-Stacking: A:W.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, L. et al., The Parallel Presentation of Two Functional CTL Epitopes Derived from the O and Asia 1 Serotypes of Foot-and-Mouth Disease Virus and Swine SLA-2*HB01: Implications for Universal Vaccine Development. Cells (2022)

Release Date

2023-01-11

Peptides

MHC class I antigen: A
beta 2 microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

MHC class I antigen

beta 2 microglobulin

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