SMTL ID : 8b3g.1

C(N)RL4CSA-UVSSA-E2-ubiquitin complex.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

3 x ZN: ZINC ION

ZN.1: 5 residues within 4Å: Chain C: C.42, I.44, C.45, H.80, C.83 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.42, C:C.45, C:H.80, C:C.83 ZN.2: 4 residues within 4Å: Chain C: C.75, H.77, C.94, D.97 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:C.75, C:H.77, C:C.94, C:D.97, C:D.97 ZN.3: 5 residues within 4Å: Chain C: C.53, C.56, C.68, H.80, H.82 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.53, C:C.56, C:C.68, C:H.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kokic, G. et al., Structural basis for RNA polymerase II ubiquitylation and inactivation in transcription-coupled repair. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-09-04

Peptides

ubiquitin-conjugating enzyme E2 D2 isoform X3: A
NEDD8: B
E3 ubiquitin-protein ligase RBX1: C
Ubiquitin: D
DNA excision repair protein ERCC-8: E
UV-stimulated scaffold protein A: F
DNA damage-binding protein 1: G
Cullin-4A: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
N

C
R

D
U

E
a

F
c

G
d

H
e

ubiquitin-conjugating enzyme E2 D2 isoform X3

NEDD8

E3 ubiquitin-protein ligase RBX1

Ubiquitin

DNA excision repair protein ERCC-8

UV-stimulated scaffold protein A

DNA damage-binding protein 1

Cullin-4A

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