SMTL ID : 6sj7.1

Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to RBM39 and Indisulam

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x EF6: N~1~-(3-chloro-1H-indol-7-yl)benzene-1,4-disulfonamide(Non-covalent)

EF6.1: 11 residues within 4Å: Chain A: T.231, F.232, Q.233, P.234, A.235, F.236, L.564 Chain C: N.13, D.17, M.18, G.21 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:N.13, C:D.17, A:Q.233 Hydrophobic interactions: A:F.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bussiere, D.E. et al., Structural basis of indisulam-mediated RBM39 recruitment to DCAF15 E3 ligase complex. Nat.Chem.Biol. (2020)

Release Date

2019-12-18

Peptides

DDB1- and CUL4-associated factor 15: A
DNA damage-binding protein 1: B
RNA binding protein 39: C
DET1- and DDB1-associated protein 1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

DDB1- and CUL4-associated factor 15

DNA damage-binding protein 1

RNA binding protein 39

DET1- and DDB1-associated protein 1

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