SMTL ID : 5hzm.1

Human HMT1 hnRNP methyltransferase-like protein 6 (S. cerevisiae)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 19 residues within 4Å: Chain A: H.58, M.61, R.67, G.91, A.92, G.93, I.96, L.97, V.112, E.113, A.114, S.115, G.139, P.140, V.141, E.142, E.156, M.167, S.170 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:H.58, A:G.91, A:G.93, A:A.114, A:S.115, A:V.141, A:E.142, A:S.170 Water bridges: A:G.95 Salt bridges: A:R.67 SAH.12: 19 residues within 4Å: Chain B: H.58, M.61, R.67, G.91, A.92, G.93, I.96, L.97, V.112, E.113, A.114, S.115, G.139, P.140, V.141, E.142, E.156, M.167, S.170 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:H.58, B:G.91, B:G.93, B:A.114, B:S.115, B:V.141, B:E.142, B:S.170 Water bridges: B:G.95 Salt bridges: B:R.67

20 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 1 residues within 4Å: Chain A: M.158 Ligand excluded by PLIP UNX.3: 3 residues within 4Å: Chain B: E.236, V.238, E.375 Ligand excluded by PLIP UNX.4: 3 residues within 4Å: Chain A: F.313, H.314, P.315 Ligand excluded by PLIP UNX.5: 4 residues within 4Å: Chain A: E.341, L.357, L.358, R.359 Ligand excluded by PLIP UNX.6: 4 residues within 4Å: Chain A: L.163, E.165, S.166, R.352 Ligand excluded by PLIP UNX.7: 2 residues within 4Å: Chain A: R.355, F.372 Ligand excluded by PLIP UNX.8: 4 residues within 4Å: Chain A: D.335, T.336, D.337, G.363 Ligand excluded by PLIP UNX.9: 2 residues within 4Å: Chain A: R.275, G.340 Ligand excluded by PLIP UNX.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.11: 2 residues within 4Å: Chain A: G.363, D.364 Ligand excluded by PLIP UNX.13: 1 residues within 4Å: Chain B: M.158 Ligand excluded by PLIP UNX.14: 3 residues within 4Å: Chain A: E.236, V.238, E.375 Ligand excluded by PLIP UNX.15: 3 residues within 4Å: Chain B: F.313, H.314, P.315 Ligand excluded by PLIP UNX.16: 4 residues within 4Å: Chain B: E.341, L.357, L.358, R.359 Ligand excluded by PLIP UNX.17: 4 residues within 4Å: Chain B: L.163, E.165, S.166, R.352 Ligand excluded by PLIP UNX.18: 2 residues within 4Å: Chain B: R.355, F.372 Ligand excluded by PLIP UNX.19: 4 residues within 4Å: Chain B: D.335, T.336, D.337, G.363 Ligand excluded by PLIP UNX.20: 2 residues within 4Å: Chain B: R.275, G.340 Ligand excluded by PLIP UNX.21: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.22: 2 residues within 4Å: Chain B: G.363, D.364 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H. et al., Structural basis of arginine asymmetrical dimethylation by PRMT6. Biochem. J. (2016)

Release Date

2016-02-17

Peptides

Protein arginine N-methyltransferase 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein arginine N-methyltransferase 6

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