SMTL ID : 7nr4.2 (1 other biounit)

X-RAY STRUCTURE OF PRMT6 IN COMPLEX WITH indazole type inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 22 residues within 4Å: Chain A: Y.48, Y.49, Y.52, H.58, M.61, R.67, G.91, A.92, G.93, I.96, L.97, E.113, A.114, S.115, G.139, P.140, V.141, E.142, E.156, M.167, S.170 Ligands: UO2.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Y.49, A:G.91, A:G.93, A:A.114, A:S.115, A:V.141, A:E.142, A:S.170 Water bridges: A:E.156, A:R.352 Salt bridges: A:R.67 pi-Stacking: A:Y.49, A:Y.49 SAH.3: 22 residues within 4Å: Chain B: Y.48, Y.49, Y.52, H.58, M.61, R.67, G.91, A.92, G.93, I.96, L.97, E.113, A.114, S.115, G.139, P.140, V.141, E.142, E.156, M.167, S.170 Ligands: UO2.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Y.49, B:G.91, B:G.93, B:A.114, B:S.115, B:V.141, B:E.142, B:S.170 Water bridges: B:G.95, B:E.156 Salt bridges: B:R.67 pi-Stacking: B:Y.49

2 x UO2: (2~{S})-2-azanyl-~{N}-[3-[3-(dimethylsulfamoyl)phenyl]-2~{H}-indazol-5-yl]propanamide(Non-covalent)

UO2.2: 15 residues within 4Å: Chain A: Y.48, C.51, Y.52, V.57, E.60, M.61, E.156, W.157, M.158, Y.160, H.164, E.165, H.318, W.319 Ligands: SAH.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.57, A:V.57 Hydrogen bonds: A:Y.52, A:Y.52, A:M.158 Water bridges: A:Y.160, A:Y.160 Salt bridges: A:E.165 UO2.4: 14 residues within 4Å: Chain B: Y.48, C.51, Y.52, E.60, M.61, E.156, W.157, M.158, Y.160, H.164, E.165, H.318, W.319 Ligands: SAH.3 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.52, B:Y.52, B:M.158 Water bridges: B:E.165 Salt bridges: B:E.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sutherland, M. et al., Rational Design and Synthesis of Selective PRMT4 Inhibitors: A New Chemotype for Development of Cancer Therapeutics*. Chemmedchem (2021)

Release Date

2021-04-07

Peptides

Protein arginine N-methyltransferase 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Protein arginine N-methyltransferase 6

Related Entries With Identical Sequence