SMTL ID : 6wad.1

Crystal Structure of Human Protein arginine N-methyltransferase 6 (PRMT6) in complex with MT2739 inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 20 residues within 4Å: Chain A: H.58, M.61, R.67, G.91, A.92, G.93, T.94, I.96, L.97, V.112, E.113, A.114, S.115, I.117, G.139, P.140, V.141, E.142, M.167, S.170 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:H.58, A:G.91, A:T.94, A:A.114, A:S.115, A:S.115, A:V.141, A:E.142, A:S.170 Salt bridges: A:R.67 SAH.3: 20 residues within 4Å: Chain B: H.58, M.61, R.67, G.91, A.92, G.93, T.94, I.96, L.97, V.112, E.113, A.114, S.115, I.117, G.139, P.140, V.141, E.142, M.167, S.170 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:H.58, B:G.91, B:T.94, B:A.114, B:S.115, B:S.115, B:V.141, B:E.142, B:S.170 Salt bridges: B:R.67

2 x TQ7: 5-bromo-N-(diphenylmethyl)-N-methylthiophene-2-carboxamide(Non-covalent)

TQ7.2: 12 residues within 4Å: Chain A: W.157, G.159, Y.160, G.161, H.164, E.165, L.168, L.192, I.291, F.293, L.344, L.354 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.157, A:W.157, A:L.168, A:L.192, A:I.291, A:F.293, A:F.293, A:L.344, A:L.344 Hydrogen bonds: A:G.161 pi-Stacking: A:Y.160 TQ7.4: 12 residues within 4Å: Chain B: W.157, G.159, Y.160, G.161, H.164, E.165, L.168, L.192, I.291, F.293, L.344, L.354 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.157, B:W.157, B:L.168, B:L.192, B:I.291, B:F.293, B:F.293, B:L.344, B:L.344 Hydrogen bonds: B:G.161 pi-Stacking: B:Y.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halabelian, L. et al., Crystal Structure of Human Protein arginine N-methyltransferase 6 (PRMT6) in complex with MT2739 inhibitor. to be published

Release Date

2020-09-02

Peptides

Protein arginine N-methyltransferase 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protein arginine N-methyltransferase 6

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