SMTL ID : 5i2e.1

Human Histidine Triad Nucleotide Binding Protein 1 (Hint1) with Bound Sulfamate Inhibitor 3a:3-(5-O-{[3-(1H-indol-3-yl)propanoyl]sulfamoyl}-beta-D-ribofuranosyl)-3H-imidazo[2,1-i]purine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

1 x 67D: 3-(5-O-{[3-(1H-indol-3-yl)propanoyl]sulfamoyl}-beta-D-ribofuranosyl)-3H-imidazo[2,1-i]purine(Non-covalent)

67D.1: 24 residues within 4Å: Chain A: I.21, F.22, I.25, P.31, A.32, F.44, H.45, D.46, I.47, S.48, L.56, N.102, G.107, G.108, Q.109, S.110, V.111, H.115, H.117 Chain B: R.98, Q.123, M.124, H.125, W.126 17 PLIP interactions: 3 interactions with chain B, 14 interactions with chain A Hydrophobic interactions: B:W.126, B:W.126, B:W.126 Hydrogen bonds: A:I.47, A:S.48, A:S.48, A:N.102, A:G.108, A:S.110, A:V.111 Water bridges: A:D.46, A:S.48, A:N.102, A:S.110 Salt bridges: A:H.115, A:H.117 pi-Stacking: A:F.22

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: W.126 Chain B: G.108, S.110 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.110 Water bridges: B:N.102, B:G.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shah, R. et al., Design, Synthesis, and Characterization of Sulfamide and Sulfamate Nucleotidomimetic Inhibitors of hHint1. Acs Med.Chem.Lett. (2016)

Release Date

2016-06-22

Peptides

Histidine triad nucleotide-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histidine triad nucleotide-binding protein 1

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