SMTL ID : 6n3x.1

Human Histidine Triad Nucleotide Binding Protein 1 (Hint1) with Bound 5'-O-[1-Benzyl]Carbamoyl Guanosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

homo-dimer

Ligands

1 x KBD: 5'-O-(benzylcarbamoyl)guanosine(Non-covalent)

KBD.1: 17 residues within 4Å: Chain A: I.21, F.22, I.25, F.44, H.45, D.46, I.47, S.48, L.56, N.102, G.108, Q.109, S.110, V.111, H.115, H.117 Chain B: W.126 13 PLIP interactions: 11 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:H.45, A:I.47, A:S.48, A:S.48, A:N.102, A:G.108, A:S.110, A:V.111 Water bridges: A:D.46, A:S.48 pi-Stacking: A:F.22, B:W.126 Hydrophobic interactions: B:W.126

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: D.39, K.60 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.39, A:K.60 EDO.3: 4 residues within 4Å: Chain A: D.39, K.60, K.61 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.39 Water bridges: A:K.61

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain B: N.102, G.108, Q.109, S.110, H.115, H.117 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shah, R.M. et al., Inhibition of HINT1 Modulates Spinal Nociception and NMDA Evoked Behavior in Mice. Acs Chem Neurosci (2019)

Release Date

2019-09-18

Peptides

Histidine triad nucleotide-binding protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histidine triad nucleotide-binding protein 1

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