SMTL ID : 5ir4.1

Crystal structure of wild-type bacterial lipoxygenase from Pseudomonas aeruginosa PA-LOX with space group C2221 at 1.48 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.380, H.385, H.558, N.562, I.688 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.380, A:H.385, A:H.558, A:I.688, H2O.1

1 x ZPE: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradec-5-enoyloxy)propyl (11Z)-octadec-11-enoate(Non-covalent)

ZPE.2: 24 residues within 4Å: Chain A: W.108, T.112, I.116, L.119, F.123, L.185, V.188, G.189, D.193, L.196, E.376, H.385, F.418, I.419, G.422, A.423, I.426, L.427, F.433, L.606, N.610, Y.612, L.615, I.688 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.108, A:T.112, A:I.116, A:L.119, A:F.123, A:L.196, A:I.419, A:I.419, A:A.423, A:L.427, A:F.433, A:L.606, A:Y.612 Hydrogen bonds: A:D.193 Water bridges: A:L.190

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: A.36, R.40, L.103, T.179 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.40, A:R.40 Water bridges: A:E.37 GOL.4: 6 residues within 4Å: Chain A: P.58, K.66, R.69, R.70, V.516, E.517 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.70, A:R.70, A:E.517 Water bridges: A:K.66 GOL.5: 6 residues within 4Å: Chain A: T.342, H.343, P.344, P.582, A.583, D.585 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.342, A:A.583 Water bridges: A:A.583 GOL.6: 6 residues within 4Å: Chain A: F.231, R.232, Q.361, K.364, T.365, W.595 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.231, A:R.232, A:R.232, A:Q.361, A:T.365, A:T.365 GOL.7: 3 residues within 4Å: Chain A: D.435, Q.443 Ligands: CL.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.443 Water bridges: A:L.306 GOL.8: 6 residues within 4Å: Chain A: E.102, C.392, Q.396, A.410, F.413, E.414 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.396 Water bridges: A:E.102 GOL.9: 6 residues within 4Å: Chain A: K.90, G.91, A.447, G.450, G.451, L.454 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.447

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 3 residues within 4Å: Chain A: K.305, L.306 Ligands: GOL.7 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.11: 1 residues within 4Å: Chain A: E.136 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.136, H2O.7, H2O.18

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.12: 4 residues within 4Å: Chain A: A.282, S.283, R.284, R.326 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banthiya, S. et al., Structural and functional basis of phospholipid oxygenase activity of bacterial lipoxygenase from Pseudomonas aeruginosa. Biochim.Biophys.Acta (2016)

Release Date

2016-08-10

Peptides

Arachidonate 15-lipoxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Arachidonate 15-lipoxygenase

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