SMTL ID : 5ir5.1

Crystal structure of wild-type bacterial lipoxygenase from Pseudomonas aeruginosa PA-LOX with space group P21212 at 1.9 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.380, H.385, H.558, N.562, I.688 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.380, A:H.385, A:H.558, A:I.688, H2O.1

1 x ZPE: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradec-5-enoyloxy)propyl (11Z)-octadec-11-enoate(Non-covalent)

ZPE.2: 24 residues within 4Å: Chain A: W.108, L.119, I.120, L.185, T.186, V.188, G.189, D.193, I.195, E.376, H.380, H.385, F.418, I.419, G.422, A.423, I.426, L.427, F.433, I.434, N.610, Y.612, L.615, I.688 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.108, A:L.119, A:I.120, A:I.195, A:I.419, A:I.419, A:A.423, A:L.427, A:L.427, A:F.433, A:I.434, A:Y.612 Hydrogen bonds: A:D.193

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: A.661, T.662, T.665 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.661, A:T.662 Water bridges: A:T.662 GOL.4: 6 residues within 4Å: Chain A: E.102, C.392, Q.396, A.410, F.413, E.414 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.396, A:A.410 Water bridges: A:G.101 GOL.5: 4 residues within 4Å: Chain A: A.519, V.522, G.523, P.536 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.523

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 3 residues within 4Å: Chain A: P.635, T.643, L.649 1 PLIP interactions: 1 interactions with chain A Water bridges: A:F.637

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banthiya, S. et al., Structural and functional basis of phospholipid oxygenase activity of bacterial lipoxygenase from Pseudomonas aeruginosa. Biochim.Biophys.Acta (2016)

Release Date

2016-08-10

Peptides

Arachidonate 15-lipoxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Arachidonate 15-lipoxygenase

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