SMTL ID : 5iu4.1

Crystal structure of stabilized A2A adenosine receptor A2AR-StaR2-bRIL in complex with ZM241385 at 1.7A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: D.61, S.100, N.385 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.61, A:S.100 Water bridges: A:D.61

1 x ZMA: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol(Non-covalent)

ZMA.2: 11 residues within 4Å: Chain A: L.94, F.177, E.178, M.186, W.351, L.354, H.355, N.358, H.369, M.375, I.379 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.94, A:W.351, A:L.354, A:M.375 Hydrogen bonds: A:N.358, A:N.358 Water bridges: A:F.177 Salt bridges: A:E.178 pi-Stacking: A:F.177, A:F.177

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 8 residues within 4Å: Chain A: H.84, G.85, F.88, F.142, M.149 Ligands: CLR.4, OLA.22, OLA.23 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.88, A:F.142 CLR.4: 8 residues within 4Å: Chain A: F.71, A.81, A.82, G.85, F.88, I.89 Ligands: CLR.3, OLC.30 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.71, A:F.88, A:I.89, A:I.89 Hydrogen bonds: A:A.82 Water bridges: A:Q.172 CLR.5: 10 residues within 4Å: Chain A: L.349, L.352, P.353, I.357, F.360, C.367, S.368, A.370, L.374 Ligands: OLA.8 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.349, A:L.352, A:P.353, A:I.357, A:F.360, A:L.374 Hydrogen bonds: A:S.368 CLR.6: 9 residues within 4Å: Chain A: F.191, L.196, I.356, C.359, F.360, F.363, C.364 Ligands: OLA.19, OLB.28 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.191, A:L.196, A:I.356, A:F.360, A:F.360, A:F.360, A:F.363

20 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.7: 8 residues within 4Å: Chain A: P.70, I.73, T.74, T.77, F.79 Ligands: OLA.13, OLA.24, OLC.30 Ligand excluded by PLIP OLA.8: 3 residues within 4Å: Chain A: P.371, L.377 Ligands: CLR.5 Ligand excluded by PLIP OLA.9: 2 residues within 4Å: Chain A: G.345, L.346 Ligand excluded by PLIP OLA.10: 6 residues within 4Å: Chain A: F.53, F.102, A.106, D.110, V.125, I.133 Ligand excluded by PLIP OLA.11: 5 residues within 4Å: Chain A: G.14, L.372, Y.376, L.377, V.380 Ligand excluded by PLIP OLA.12: 4 residues within 4Å: Chain A: I.136, A.143 Ligands: OLA.16, OLA.21 Ligand excluded by PLIP OLA.13: 2 residues within 4Å: Ligands: OLA.7, OLA.24 Ligand excluded by PLIP OLA.14: 6 residues within 4Å: Chain A: L.28, L.31, G.32, L.35, W.38, F.391 Ligand excluded by PLIP OLA.15: 1 residues within 4Å: Chain A: W.373 Ligand excluded by PLIP OLA.16: 6 residues within 4Å: Chain A: T.128, R.129, G.132, I.136, V.139 Ligands: OLA.12 Ligand excluded by PLIP OLA.17: 1 residues within 4Å: Ligands: OLA.26 Ligand excluded by PLIP OLA.18: 4 residues within 4Å: Chain A: V.34, C.37, W.41 Ligands: OLB.29 Ligand excluded by PLIP OLA.19: 9 residues within 4Å: Chain A: L.196, L.199, L.200, L.203, Y.206, A.341, A.344, A.348 Ligands: CLR.6 Ligand excluded by PLIP OLA.20: 1 residues within 4Å: Chain A: T.20 Ligand excluded by PLIP OLA.21: 5 residues within 4Å: Chain A: A.143, M.149, L.150 Ligands: OLA.12, OLA.22 Ligand excluded by PLIP OLA.22: 5 residues within 4Å: Chain A: A.143, M.149 Ligands: CLR.3, OLA.21, OLA.23 Ligand excluded by PLIP OLA.23: 6 residues within 4Å: Chain A: I.134, A.135, F.142 Ligands: CLR.3, OLA.22, OLC.31 Ligand excluded by PLIP OLA.24: 3 residues within 4Å: Ligands: OLA.7, OLA.13, OLC.30 Ligand excluded by PLIP OLA.25: 4 residues within 4Å: Chain A: S.15, I.19, L.23, T.77 Ligand excluded by PLIP OLA.26: 5 residues within 4Å: Chain A: I.25, T.384, V.387, V.388 Ligands: OLA.17 Ligand excluded by PLIP

3 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLB.27: 4 residues within 4Å: Chain A: Y.188, F.192, F.363 Ligands: OLB.28 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.192, A:F.192 Hydrogen bonds: A:Y.188 OLB.28: 6 residues within 4Å: Chain A: F.192, L.196, F.363, P.365 Ligands: CLR.6, OLB.27 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.192, A:L.196, A:F.363, A:F.363 Water bridges: A:D.366 OLB.29: 9 residues within 4Å: Chain A: C.37, V.40, W.41, Y.52, V.55, A.59, I.62, L.63 Ligands: OLA.18 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.41, A:A.59, A:I.62, A:L.63 Hydrogen bonds: A:Y.52, A:Y.52

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.30: 10 residues within 4Å: Chain A: V.66, L.67, P.70, F.71, T.74, F.79, C.80 Ligands: CLR.4, OLA.7, OLA.24 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.66, A:L.67, A:P.70, A:F.71, A:F.71, A:T.74, A:F.79 Hydrogen bonds: A:C.80 Water bridges: A:C.80, A:Q.172 OLC.31: 9 residues within 4Å: Chain A: Y.52, V.55, L.63, G.127, A.131, I.134, W.138, F.142 Ligands: OLA.23 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.55, A:L.63, A:W.138, A:F.142 Hydrogen bonds: A:G.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Segala, E. et al., Controlling the Dissociation of Ligands from the Adenosine A2A Receptor through Modulation of Salt Bridge Strength. J.Med.Chem. (2016)

Release Date

2016-06-29

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a

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