SMTL ID : 6s0l.1

Structure of the A2A adenosine receptor determined at SwissFEL using native-SAD at 4.57 keV from all available diffraction patterns

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x ZMA: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol(Non-covalent)

ZMA.1: 12 residues within 4Å: Chain A: L.94, F.177, E.178, M.186, W.351, L.354, H.355, N.358, H.369, L.372, M.375, I.379 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.94, A:W.351, A:L.372 Hydrogen bonds: A:N.358, A:N.358 Salt bridges: A:E.178 pi-Stacking: A:F.177, A:F.177

7 x OLA: OLEIC ACID(Non-covalent)

OLA.2: 6 residues within 4Å: Chain A: V.66, P.70, I.73, T.74, F.79 Ligands: OLC.11 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.66, A:P.70, A:I.73, A:T.74 OLA.3: 3 residues within 4Å: Chain A: P.371, L.377 Ligands: CLR.14 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.371, A:L.377 OLA.4: 4 residues within 4Å: Chain A: F.53, I.113, V.125, I.133 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.133 Hydrogen bonds: A:A.106 OLA.5: 5 residues within 4Å: Chain A: G.14, S.15, L.372, Y.376, L.377 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.376, A:L.377 Hydrogen bonds: A:S.76 OLA.6: 4 residues within 4Å: Chain A: Y.206, A.341, G.345 Ligands: CLR.15 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.206, A:A.341 OLA.7: 2 residues within 4Å: Chain A: S.16, T.20 No protein-ligand interaction detected (PLIP) OLA.8: 2 residues within 4Å: Chain A: M.149, L.150 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.84

2 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLB.9: 2 residues within 4Å: Chain A: F.363 Ligands: CLR.15 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.363 OLB.10: 7 residues within 4Å: Chain A: C.37, V.40, W.41, Y.52, V.55, L.63 Ligands: OLC.12 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.55, A:L.63

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.11: 8 residues within 4Å: Chain A: L.67, P.70, F.71, F.79, C.80, Q.172 Ligands: OLA.2, CLR.13 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.67, A:P.70, A:F.71 Hydrogen bonds: A:Q.172 OLC.12: 6 residues within 4Å: Chain A: Y.52, G.127, I.134, W.138, F.142 Ligands: OLB.10 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.138, A:W.138, A:F.142 Hydrogen bonds: A:G.127

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.13: 5 residues within 4Å: Chain A: A.81, A.82, G.85, I.89 Ligands: OLC.11 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.89, A:I.89 Hydrogen bonds: A:A.82 CLR.14: 10 residues within 4Å: Chain A: L.349, L.352, P.353, I.357, F.360, C.367, S.368, A.370, L.374 Ligands: OLA.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.349, A:L.352, A:P.353, A:I.357, A:F.360, A:A.370, A:L.374 Hydrogen bonds: A:S.368, A:S.368 CLR.15: 5 residues within 4Å: Chain A: F.360, F.363, C.364 Ligands: OLA.6, OLB.9 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.360, A:F.360, A:F.360, A:F.363

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nass, K. et al., Advances in long-wavelength native phasing at X-ray free-electron lasers. Iucrj (2020)

Release Date

2020-07-15

Peptides

A2a adenosine receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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A2a adenosine receptor

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