SMTL ID : 5iub.1

Crystal structure of stabilized A2A adenosine receptor A2AR-StaR2-bRIL in complex with compound 12x at 2.1A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: D.61, S.100, N.385 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.61, A:S.100, A:N.385

1 x 6DV: N~5~-{2-[4-(2,4-difluorophenyl)piperazin-1-yl]ethyl}-2-(furan-2-yl)[1,2,4]triazolo[1,5-a][1,3,5]triazine-5,7-diamine(Non-covalent)

6DV.2: 15 residues within 4Å: Chain A: L.94, F.177, E.178, M.186, W.351, L.354, H.355, N.358, H.369, A.370, P.371, L.372, M.375, Y.376, I.379 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.94, A:W.351, A:L.354 Hydrogen bonds: A:N.358, A:N.358 Water bridges: A:F.177 Salt bridges: A:E.178, A:E.178 pi-Stacking: A:F.177, A:F.177, A:H.369

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 9 residues within 4Å: Chain A: F.71, A.81, A.82, G.85, F.88, I.89 Ligands: OLA.17, OLB.25, OLB.26 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.71, A:A.81, A:F.88, A:I.89, A:I.89 Hydrogen bonds: A:A.82 CLR.4: 9 residues within 4Å: Chain A: L.349, L.352, P.353, I.357, F.360, C.367, S.368, L.374 Ligands: OLA.7 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.349, A:L.352, A:P.353, A:I.357, A:F.360 Hydrogen bonds: A:S.368 CLR.5: 9 residues within 4Å: Chain A: L.196, L.352, I.356, C.359, F.360, F.363, C.364 Ligands: OLA.20, OLB.22 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.196, A:L.352, A:I.356, A:F.360, A:F.360, A:F.360, A:F.363, A:F.363

16 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.6: 9 residues within 4Å: Chain A: V.66, I.73, T.74, T.77, F.79 Ligands: OLA.11, OLB.23, OLB.25, OLB.28 Ligand excluded by PLIP OLA.7: 3 residues within 4Å: Chain A: P.371, L.377 Ligands: CLR.4 Ligand excluded by PLIP OLA.8: 8 residues within 4Å: Chain A: F.53, F.102, A.106, I.109, D.110, V.125, I.133, C.137 Ligand excluded by PLIP OLA.9: 6 residues within 4Å: Chain A: G.14, S.15, L.372, Y.376, V.380 Ligands: OLA.19 Ligand excluded by PLIP OLA.10: 4 residues within 4Å: Chain A: I.136, A.143 Ligands: OLA.13, OLC.30 Ligand excluded by PLIP OLA.11: 3 residues within 4Å: Ligands: OLA.6, OLB.23, OLB.28 Ligand excluded by PLIP OLA.12: 6 residues within 4Å: Chain A: L.28, L.31, G.32, L.35, W.38, F.391 Ligand excluded by PLIP OLA.13: 5 residues within 4Å: Chain A: R.129, G.132, I.136, V.139 Ligands: OLA.10 Ligand excluded by PLIP OLA.14: 4 residues within 4Å: Chain A: V.34, C.37, W.41 Ligands: OLB.27 Ligand excluded by PLIP OLA.15: 4 residues within 4Å: Chain A: I.12, S.16, T.20 Ligands: OLB.28 Ligand excluded by PLIP OLA.16: 1 residues within 4Å: Chain A: W.373 Ligand excluded by PLIP OLA.17: 2 residues within 4Å: Chain A: G.85 Ligands: CLR.3 Ligand excluded by PLIP OLA.18: 2 residues within 4Å: Chain A: G.345, L.346 Ligand excluded by PLIP OLA.19: 5 residues within 4Å: Chain A: A.24, T.384, V.388 Ligands: OLA.9, OLA.21 Ligand excluded by PLIP OLA.20: 10 residues within 4Å: Chain A: L.196, L.199, L.200, L.203, Y.206, L.207, A.341, A.344, A.348 Ligands: CLR.5 Ligand excluded by PLIP OLA.21: 2 residues within 4Å: Chain A: I.392 Ligands: OLA.19 Ligand excluded by PLIP

7 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLB.22: 4 residues within 4Å: Chain A: L.196, F.363 Ligands: CLR.5, OLC.29 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.196, A:F.363, A:F.363 OLB.23: 3 residues within 4Å: Ligands: OLA.6, OLA.11, OLB.25 No protein-ligand interaction detected (PLIP) OLB.24: 7 residues within 4Å: Chain A: A.135, W.138, F.142, A.143, L.146, M.149 Ligands: OLC.30 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.138, A:F.142, A:F.142, A:L.146 OLB.25: 10 residues within 4Å: Chain A: V.66, L.67, P.70, F.71, T.74, F.79, C.80 Ligands: CLR.3, OLA.6, OLB.23 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.71, A:T.74 OLB.26: 10 residues within 4Å: Chain A: Y.52, V.55, S.56, A.59, L.63, L.67, G.127, I.134, W.138 Ligands: CLR.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.55, A:A.59, A:L.67, A:I.134, A:W.138, A:W.138 OLB.27: 7 residues within 4Å: Chain A: C.37, W.41, Q.47, Y.52, V.55, A.59 Ligands: OLA.14 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.55 Hydrogen bonds: A:Y.52 OLB.28: 9 residues within 4Å: Chain A: P.11, I.12, S.15, I.19, S.76, T.77 Ligands: OLA.6, OLA.11, OLA.15 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.19, A:T.77 Hydrogen bonds: A:S.15

2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.29: 8 residues within 4Å: Chain A: Y.188, F.192, L.196, V.197, L.200, F.362, F.363 Ligands: OLB.22 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.196, A:V.197, A:L.200 Hydrogen bonds: A:F.362 OLC.30: 9 residues within 4Å: Chain A: H.84, V.139, A.143, M.149, L.150, G.151, N.153 Ligands: OLA.10, OLB.24 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.139, A:A.143, A:L.150 Hydrogen bonds: A:L.150, A:N.153, A:N.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Segala, E. et al., Controlling the Dissociation of Ligands from the Adenosine A2A Receptor through Modulation of Salt Bridge Strength. J.Med.Chem. (2016)

Release Date

2016-06-29

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a

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