SMTL ID : 5j89.1 (1 other biounit)

Structure of human Programmed cell death 1 ligand 1 (PD-L1) with low molecular mass inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x 6GX: N-{2-[({2-methoxy-6-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]pyridin-3-yl}methyl)amino]ethyl}acetamide(Non-covalent)

6GX.1: 17 residues within 4Å: Chain A: T.19, Y.55, M.114, I.115, S.116, A.120, D.121, Y.122, K.123 Chain B: I.53, Y.55, Q.65, M.114, I.115, S.116, A.120, D.121 15 PLIP interactions: 8 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:T.19, A:M.114, A:A.120, A:Y.122, B:I.53, B:Y.55, B:Y.55, B:Y.55, B:Q.65, B:M.114, B:A.120 Hydrogen bonds: A:K.123, A:K.123 Water bridges: A:F.18 pi-Stacking: A:Y.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zak, K.M. et al., Structural basis for small molecule targeting of the programmed death ligand 1 (PD-L1). Oncotarget (2016)

Release Date

2016-04-27

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Programmed cell death 1 ligand 1

Related Entries With Identical Sequence