SMTL ID : 5n2d.1

Structure of PD-L1/small-molecule inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

2 x 8J8: ~{N}-[2-[[2,6-dimethoxy-4-[(2-methyl-3-phenyl-phenyl)methoxy]phenyl]methylamino]ethyl]ethanamide(Non-covalent)

8J8.1: 19 residues within 4Å: Chain A: A.17, F.18, T.19, I.53, Y.55, M.114, I.115, S.116, A.120, D.121, Y.122 Chain B: I.53, Y.55, Q.65, V.67, M.114, I.115, S.116, A.120 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:I.53, B:Y.55, B:Y.55, B:M.114, B:A.120, A:A.17, A:I.53, A:M.114, A:A.120 pi-Stacking: A:Y.55 8J8.2: 19 residues within 4Å: Chain C: T.19, I.53, Y.55, M.114, I.115, S.116, A.120, D.121, Y.122, K.123 Chain D: I.53, Y.55, Q.65, V.67, M.114, I.115, S.116, A.120, D.121 12 PLIP interactions: 7 interactions with chain C, 5 interactions with chain D Hydrophobic interactions: C:I.53, C:M.114, C:A.120, C:Y.122, D:I.53, D:Y.55, D:M.114, D:A.120 Hydrogen bonds: C:D.121, C:K.123 pi-Stacking: C:Y.55, D:Y.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guzik, K. et al., Small-Molecule Inhibitors of the Programmed Cell Death-1/Programmed Death-Ligand 1 (PD-1/PD-L1) Interaction via Transiently Induced Protein States and Dimerization of PD-L1. J. Med. Chem. (2017)

Release Date

2017-06-28

Peptides

Programmed cell death 1 ligand 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Programmed cell death 1 ligand 1

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