SMTL ID : 5j89.2 (1 other biounit)

Structure of human Programmed cell death 1 ligand 1 (PD-L1) with low molecular mass inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Y.31, P.132, A.134, A.135 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.135 Water bridges: A:Y.31

1 x 6GX: N-{2-[({2-methoxy-6-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]pyridin-3-yl}methyl)amino]ethyl}acetamide(Non-covalent)

6GX.2: 16 residues within 4Å: Chain A: T.19, Y.55, M.114, I.115, S.116, A.120, D.121, Y.122 Chain B: I.53, Y.55, Q.65, M.114, I.115, S.116, A.120, D.121 10 PLIP interactions: 4 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:M.114, A:A.120, A:Y.122, B:I.53, B:Y.55, B:Y.55, B:Y.55, B:A.120 pi-Stacking: A:Y.55 Hydrogen bonds: B:Q.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zak, K.M. et al., Structural basis for small molecule targeting of the programmed death ligand 1 (PD-L1). Oncotarget (2016)

Release Date

2016-04-27

Peptides

Programmed cell death 1 ligand 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Programmed cell death 1 ligand 1

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