SMTL ID : 5ja1.1

EntF, a Terminal Nonribosomal Peptide Synthetase Module Bound to the MbtH-Like Protein YbdZ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 75C: 5'-({[(2R,3S)-3-amino-4-hydroxy-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}butyl]sulfonyl}amino)-5'-deoxyadenosine(Covalent)

75C.1: 28 residues within 4Å: Chain A: F.649, D.650, V.651, R.675, V.695, S.724, G.725, E.726, A.727, N.746, L.747, Y.748, G.749, P.750, T.751, V.755, D.756, I.777, D.842, Y.854, R.857, K.863, R.865, G.866, Q.867, R.868, S.1008, M.1032 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:F.649, A:V.695 Hydrogen bonds: A:D.650, A:S.724, A:S.724, A:G.725, A:N.746, A:L.747, A:G.749, A:T.751, A:D.756, A:D.842, A:Y.854, A:R.857, A:K.863, A:K.863, A:R.865, A:G.866, A:Q.867, A:R.868 Salt bridges: A:R.675, A:R.865 pi-Stacking: A:Y.748

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: K.863, R.905 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, B.R. et al., Structures of a Nonribosomal Peptide Synthetase Module Bound to MbtH-like Proteins Support a Highly Dynamic Domain Architecture. J.Biol.Chem. (2016)

Release Date

2016-09-14

Peptides

Enterobactin synthase component F: A
Enterobactin biosynthesis protein YbdZ: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Enterobactin synthase component F

Enterobactin biosynthesis protein YbdZ

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