SMTL ID : 5t3d.1

Crystal structure of holo-EntF a nonribosomal peptide synthetase in the thioester-forming conformation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x 75C: 5'-({[(2R,3S)-3-amino-4-hydroxy-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}butyl]sulfonyl}amino)-5'-deoxyadenosine(Covalent)

75C.1: 27 residues within 4Å: Chain A: F.649, D.650, V.651, R.675, V.695, S.724, G.725, E.726, A.727, N.746, L.747, Y.748, G.749, P.750, T.751, V.755, D.756, I.777, D.842, Y.854, R.857, K.863, R.865, G.866, Q.867, R.868, S.1008 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:R.675, A:V.695 Hydrogen bonds: A:D.650, A:S.724, A:S.724, A:G.725, A:N.746, A:L.747, A:T.751, A:T.751, A:D.842, A:R.857, A:K.863, A:K.863, A:R.865, A:G.866, A:Q.867, A:Q.867, A:R.868 Water bridges: A:R.865 Salt bridges: A:R.675, A:R.865 pi-Stacking: A:Y.748, A:Y.748, A:Y.854

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Drake, E.J. et al., Structures of two distinct conformations of holo-non-ribosomal peptide synthetases. Nature (2016)

Release Date

2016-09-21

Peptides

Enterobactin synthase component F: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Enterobactin synthase component F

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