SMTL ID : 5ja2.1

EntF, a Terminal Nonribosomal Peptide Synthetase Module Bound to the non-Native MbtH-Like Protein PA2412

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 75C: 5'-({[(2R,3S)-3-amino-4-hydroxy-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}butyl]sulfonyl}amino)-5'-deoxyadenosine(Covalent)

75C.1: 26 residues within 4Å: Chain A: F.649, D.650, R.675, V.695, S.724, G.725, E.726, A.727, N.746, L.747, Y.748, G.749, P.750, T.751, V.755, D.756, I.777, D.842, Y.854, R.857, K.863, R.865, G.866, Q.867, R.868, S.1008 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:F.649, A:V.695 Hydrogen bonds: A:D.650, A:S.724, A:S.724, A:G.725, A:N.746, A:L.747, A:G.749, A:T.751, A:D.756, A:D.842, A:Y.854, A:R.857, A:K.863, A:R.865, A:G.866, A:Q.867, A:R.868 Salt bridges: A:R.675, A:R.865 pi-Stacking: A:Y.748

2 x BU9: Meso-2,3-Butanediol(Non-covalent)

BU9.2: 6 residues within 4Å: Chain A: S.608, K.613, L.821, S.824, R.825, R.839 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.821 Hydrogen bonds: A:S.824, A:S.824, A:R.825, A:R.839 BU9.3: 6 residues within 4Å: Chain A: L.111, R.112, S.115, K.117, P.118, R.137 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.111, A:K.117 Hydrogen bonds: A:R.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller, B.R. et al., Structures of a Nonribosomal Peptide Synthetase Module Bound to MbtH-like Proteins Support a Highly Dynamic Domain Architecture. J.Biol.Chem. (2016)

Release Date

2016-09-14

Peptides

Enterobactin synthase component F: A
MbtH-Like Protein PA2412: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Enterobactin synthase component F

MbtH-Like Protein PA2412

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