SMTL ID : 5jlw.2 (1 other biounit)

AntpHD with 15bp DNA duplex R-monothioated at Cytidine-8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

2 x NI: NICKEL (II) ION(Non-functional Binders)

NI.1: 3 residues within 4Å: Chain B: A.1, G.2, A.3 No protein-ligand interaction detected (PLIP) NI.2: 3 residues within 4Å: Chain B: A.12, G.13, A.14 No protein-ligand interaction detected (PLIP)

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 2 residues within 4Å: Chain C: T.13 Ligands: MPD.4 No protein-ligand interaction detected (PLIP) MPD.4: 3 residues within 4Å: Chain C: T.13 Ligands: MPD.3, MPD.5 No protein-ligand interaction detected (PLIP) MPD.5: 5 residues within 4Å: Chain B: G.6, C.7 Chain C: T.13, T.14 Ligands: MPD.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, D. et al., Stereospecific Effects of Oxygen-to-Sulfur Substitution in DNA Phosphate on Ion Pair Dynamics and Protein-DNA Affinity. Chembiochem (2016)

Release Date

2016-06-22

Peptides

Homeotic protein antennapedia: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Homeotic protein antennapedia

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