SMTL ID : 5jw3.1

Structure of MEDI8852 Fab Fragment in Complex with H7 HA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.75 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 6 residues within 4Å: Chain A: N.28 Chain C: Q.1, H.104, T.106, F.108, G.109 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.104, C:Q.1 NAG-NAG-BMA-MAN.4: 6 residues within 4Å: Chain E: N.28 Chain G: Q.1, H.104, T.106, F.108, G.109 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:H.104, G:Q.1 NAG-NAG-BMA-MAN.7: 6 residues within 4Å: Chain I: N.28 Chain K: Q.1, H.104, T.106, F.108, G.109 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:H.104, K:Q.1

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain B: E.69, E.72, K.75, G.78, N.79, N.82 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:E.69 NAG-NAG.5: 6 residues within 4Å: Chain F: E.69, E.72, K.75, G.78, N.79, N.82 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:E.69 NAG-NAG.8: 6 residues within 4Å: Chain J: E.69, E.72, K.75, G.78, N.79, N.82 1 PLIP interactions: 1 interactions with chain J Hydrophobic interactions: J:E.69

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain B: D.147, A.150, N.154 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.147, B:N.154 NAG.6: 3 residues within 4Å: Chain F: D.147, A.150, N.154 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:D.147, F:N.154 NAG.9: 3 residues within 4Å: Chain J: D.147, A.150, N.154 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:D.147, J:N.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kallewaard, N.L. et al., Structure and Function Analysis of an Antibody Recognizing All Influenza A Subtypes. Cell (2016)

Release Date

2016-08-03

Peptides

Hemagglutinin: AEI
Hemagglutinin: BFJ
MEDI8852 heavy chain: CGK
MEDI8852 light chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

B
B

F
B

J
B

C
H

G
H

K
H

D
L

H
L

L
L

Hemagglutinin

Hemagglutinin

MEDI8852 heavy chain

MEDI8852 light chain

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