SMTL ID : 5jw4.2 (1 other biounit)

Structure of MEDI8852 Fab Fragment in Complex with H5 HA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain B: E.150, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain D: E.150, N.154 No protein-ligand interaction detected (PLIP)

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.3: 3 residues within 4Å: Chain A: N.165, T.167, N.236 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.238 NAG.4: 1 residues within 4Å: Chain A: N.23 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.23 NAG.5: 1 residues within 4Å: Chain A: N.286 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain C: N.165, A.238 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain C: Q.15, K.22, N.23 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:K.22 Hydrogen bonds: C:Q.15, C:N.23 NAG.8: 1 residues within 4Å: Chain C: N.286 No protein-ligand interaction detected (PLIP) NAG.9: 3 residues within 4Å: Chain E: N.165, N.236 Ligands: NAG.10 No protein-ligand interaction detected (PLIP) NAG.10: 2 residues within 4Å: Chain E: N.236 Ligands: NAG.9 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.236 NAG.11: 3 residues within 4Å: Chain E: Q.15, K.22, N.23 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:K.22 Hydrogen bonds: E:Q.15, E:N.23 NAG.12: 2 residues within 4Å: Chain E: N.275, N.286 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.286 NAG.13: 2 residues within 4Å: Chain F: E.150, N.154 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kallewaard, N.L. et al., Structure and Function Analysis of an Antibody Recognizing All Influenza A Subtypes. Cell (2016)

Release Date

2016-08-03

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF
MEDI8852 heavy chain: GIK
MEDI8852 light chain: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

E
K

B
H

D
J

F
L

G
S

I
U

K
W

H
T

J
V

L
X

Hemagglutinin

Hemagglutinin

MEDI8852 heavy chain

MEDI8852 light chain

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