SMTL ID : 5jw4.1 (1 other biounit)

Structure of MEDI8852 Fab Fragment in Complex with H5 HA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-3-3-2-2-1-1-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain B: E.147, E.150, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain E: N.165, T.167, N.236 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.236 NAG-NAG.3: 3 residues within 4Å: Chain F: E.147, E.150, N.154 No protein-ligand interaction detected (PLIP)

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: N.165, N.236, A.238 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: Q.15, K.22, N.23 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.22 Hydrogen bonds: A:Q.15, A:N.23 NAG.6: 1 residues within 4Å: Chain A: N.286 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain C: N.165, N.236 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.238 NAG.8: 1 residues within 4Å: Chain C: N.23 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.15, C:N.23 NAG.9: 2 residues within 4Å: Chain C: N.275, N.286 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.286 NAG.10: 4 residues within 4Å: Chain D: E.147, E.150, N.154, T.156 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.147, D:T.156, D:T.156 NAG.11: 2 residues within 4Å: Chain E: K.22, N.23 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:K.22 Hydrogen bonds: E:Q.15, E:N.23 NAG.12: 1 residues within 4Å: Chain E: N.286 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kallewaard, N.L. et al., Structure and Function Analysis of an Antibody Recognizing All Influenza A Subtypes. Cell (2016)

Release Date

2016-08-03

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF
MEDI8852 heavy chain: GI
MEDI8852 light chain: HJ
MEDI8852 heavy chain: K
MEDI8852 light chain: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
M

I
O

H
N

J
P

K
Q

L
R

Hemagglutinin

Hemagglutinin

MEDI8852 heavy chain

MEDI8852 light chain

MEDI8852 heavy chain

MEDI8852 light chain

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