SMTL ID : 5kgk.1

Crystal structure of PIM1 with inhibitor: 3-(4-methoxyphenyl)-1~{H}-pyrazol-5-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: F.101, I.104, T.105, D.141, D.205, G.209, D.210 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.101, A:D.210 EDO.2: 5 residues within 4Å: Chain A: W.240, S.247, D.248, R.249, E.254 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.240 EDO.3: 5 residues within 4Å: Chain A: R.107, A.109, L.110, Q.111, L.114 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.107, A:R.107, A:Q.111 EDO.4: 5 residues within 4Å: Chain A: R.192, V.196, P.250, T.251, F.252 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.252 EDO.5: 4 residues within 4Å: Chain A: E.233, H.236, H.258, P.259 No protein-ligand interaction detected (PLIP) EDO.6: 4 residues within 4Å: Chain A: Q.111, E.112, E.113, R.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.113, A:R.116, A:R.116

1 x 6SD: 3-(4-methoxyphenyl)-1~{H}-pyrazol-5-amine(Non-covalent)

6SD.7: 9 residues within 4Å: Chain A: L.15, A.36, K.38, I.75, L.91, E.92, L.145, I.156, D.157 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.36, A:I.75, A:L.91, A:L.145, A:I.156 Hydrogen bonds: A:K.38, A:E.60, A:D.157

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 3 residues within 4Å: Chain A: R.127, N.131, F.252 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.253 Salt bridges: A:R.127 SO4.9: 3 residues within 4Å: Chain A: D.79, W.80, F.81 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferguson, A.D., Structure of PIM1 in complex with inhibitor. To Be Published

Release Date

2017-08-09

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase pim-1

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