SMTL ID : 5klx.1 (3 other biounits)

Crystal Structure of SMT Fusion Peptidyl-Prolyl Cis-Trans Isomerase from Burkholderia Pseudomallei Complexed with SF110

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x 6UO: 2-[(2~{S})-1-(phenylmethyl)sulfonylpiperidin-2-yl]carbonyloxyethyl pyridine-3-carboxylate(Non-covalent)

6UO.1: 12 residues within 4Å: Chain A: Y.129, F.139, D.140, R.145, F.149, V.158, I.159, W.162, Y.185, V.193, I.194, F.202 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.129, A:D.140, A:F.149, A:F.149, A:V.158, A:I.159, A:W.162, A:W.162, A:V.193, A:I.194 Hydrogen bonds: A:I.159, A:Y.185

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.147, P.148 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.147, A:D.147, A:P.148, H2O.2

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 3 residues within 4Å: Chain A: D.28, S.30, W.132 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.28, A:S.30, A:S.30 Water bridges: A:G.136 pi-Stacking: A:W.132, A:W.132

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 5 residues within 4Å: Chain A: G.156, M.157, V.158, I.159, Y.185 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lorimer, D.D. et al., Crystal Structure of SMT Fusion Peptidyl-Prolyl Cis-Trans Isomerase from Burkholderia Pseudomallei Complexed with SF110. To Be Published

Release Date

2017-05-31

Peptides

Chimera protein of Ubiquitin-like protein SMT3 and Peptidyl-prolyl cis-trans isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chimera protein of Ubiquitin-like protein SMT3 and Peptidyl-prolyl cis-trans isomerase

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