SMTL ID : 6o49.2 (1 other biounit)

CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH SF339

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x LL7: (2~{S})-~{N}-[3-oxidanylidene-3-[(3,4,5-trimethoxyphenyl)amino]propyl]-1-(phenylmethyl)sulfonyl-piperidine-2-carboxamide(Non-covalent)

LL7.1: 13 residues within 4Å: Chain A: Y.129, F.139, D.140, F.149, V.158, I.159, W.162, Y.185, A.190, G.191, V.193, I.194, F.202 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.129, A:D.140, A:F.149, A:V.158, A:W.162, A:W.162, A:V.193, A:I.194 Hydrogen bonds: A:I.159, A:Y.185 pi-Stacking: A:F.139

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: D.208, V.209 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.208, A:V.209, H2O.1, H2O.1

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: Q.182, G.184, Y.185, G.186 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.182 Water bridges: A:Y.185 EDO.4: 1 residues within 4Å: Chain A: R.188 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.188, A:R.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iwasaki, J. et al., CRYSTAL STRUCTURE OF SMT FUSION PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FROM BURKHOLDERIA PSEUDOMALLEI COMPLEXED WITH SF339. to be published

Release Date

2020-02-12

Peptides

Ubiquitin-like protein SMT3,Peptidyl-prolyl cis-trans isomerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ubiquitin-like protein SMT3,Peptidyl-prolyl cis-trans isomerase

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