SMTL ID : 5kn0.1 (1 other biounit)

Native bovine skeletal calsequestrin, low-Ca2+ form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain B: I.249, N.316, T.318, D.319 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 6 residues within 4Å: Chain A: G.248, I.249, N.316, T.318, D.319 Ligands: MPD.9 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.249 Hydrogen bonds: A:N.316, A:D.319

10 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: N.17, V.18, M.74, V.75, D.76, D.80 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:V.18, A:M.74, A:D.80 CA.4: 4 residues within 4Å: Chain A: E.199, M.202, T.229, T.277 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.199, A:E.199, A:T.229, A:T.277, A:T.277 CA.5: 3 residues within 4Å: Chain A: D.210, P.212, E.217 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.210, A:P.212 CA.6: 3 residues within 4Å: Chain A: T.189, E.194, T.207 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.189, H2O.1 CA.7: 4 residues within 4Å: Chain A: D.145, P.172, Y.173, E.236 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:P.172 CA.10: 6 residues within 4Å: Chain B: N.17, V.18, M.74, V.75, D.76, D.80 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:M.74, B:D.80 CA.11: 4 residues within 4Å: Chain B: E.199, M.202, T.229, T.277 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.199, B:E.199, B:T.229, B:T.277, B:T.277 CA.12: 3 residues within 4Å: Chain B: D.210, P.212, E.217 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.210 CA.13: 4 residues within 4Å: Chain B: T.189, L.190, E.194, T.207 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.189, B:T.189 CA.14: 3 residues within 4Å: Chain B: D.121, P.172, Y.173 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:P.172

5 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.8: 13 residues within 4Å: Chain A: W.242, I.287, L.295, Y.298, W.299, T.302, F.303, V.315, A.320 Chain B: L.4, D.5, F.6, P.7 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.242, A:W.242, B:F.6 Hydrogen bonds: A:Y.298, A:W.299 MPD.9: 9 residues within 4Å: Chain A: I.249, V.314, N.316, D.321, S.322, V.323, V.346, L.347 Ligands: NAG.2 No protein-ligand interaction detected (PLIP) MPD.15: 9 residues within 4Å: Chain A: P.7, E.8, Y.9, L.60, V.64 Chain B: E.109, L.294, L.295, Y.298 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.7, A:V.64, B:L.294 Hydrogen bonds: A:Y.9 MPD.16: 10 residues within 4Å: Chain A: E.109, L.294, L.295, Y.298 Chain B: P.7, E.8, Y.9, L.60, Q.63, V.64 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:P.7, B:L.60, A:L.294, A:L.294 Hydrogen bonds: B:P.7, B:E.8 MPD.17: 15 residues within 4Å: Chain A: L.4, D.5, F.6, P.7 Chain B: W.242, V.252, F.254, I.287, L.295, Y.298, W.299, T.302, F.303, V.315, A.320 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:F.6, B:W.242, B:W.242, B:F.303, B:A.320 Hydrogen bonds: B:W.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lewis, K.M. et al., Characterization of Post-Translational Modifications to Calsequestrins of Cardiac and Skeletal Muscle. Int J Mol Sci (2016)

Release Date

2016-10-05

Peptides

Calsequestrin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Calsequestrin

Related Entries With Identical Sequence