SMTL ID : 5kn2.2 (1 other biounit)

Native bovine skeletal calsequestrin, high-Ca2+ form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: D.247, N.316, T.318, D.319, N.352, T.353, E.354 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 7 residues within 4Å: Chain B: I.249, N.316, T.318, D.319, N.352, T.353, E.354 No protein-ligand interaction detected (PLIP)

26 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: D.113 Chain B: E.109, D.113 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.113 CA.4: 4 residues within 4Å: Chain A: E.256, D.290 Chain B: E.117, D.121 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:D.290, B:D.121 CA.5: 4 residues within 4Å: Chain A: D.259, D.261, E.330 Chain B: E.128 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Metal complexes: B:E.128, B:E.128, A:D.259, A:D.259, A:D.261 CA.6: 7 residues within 4Å: Chain A: P.260, D.261, E.330, E.331 Chain B: E.128, L.129, E.135 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Metal complexes: B:E.135, A:D.261, A:E.331 CA.7: 6 residues within 4Å: Chain A: D.261, E.264, E.330, E.331, L.333 Chain B: E.135 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.331 CA.8: 4 residues within 4Å: Chain A: D.13, V.15, E.55, E.59 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.13, A:V.15, A:E.55, A:E.59 CA.9: 6 residues within 4Å: Chain A: E.91, S.94, E.105, D.107, E.240, E.243 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.91, A:E.91, A:E.105, A:E.240 CA.10: 6 residues within 4Å: Chain A: E.91, E.92, D.93, S.94, D.107, E.243 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.91, A:D.107, A:D.107, A:E.243 CA.11: 2 residues within 4Å: Chain A: E.117 Chain B: D.290 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Metal complexes: B:D.290, A:E.117, A:E.117 CA.12: 4 residues within 4Å: Chain A: E.117, D.121 Chain B: E.256, D.290 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:D.121, B:D.290 CA.13: 3 residues within 4Å: Chain A: T.189, D.196, T.207 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.189, A:T.189 CA.14: 4 residues within 4Å: Chain A: E.199, S.228, T.229, T.277 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.199, A:T.229, A:T.277 CA.15: 4 residues within 4Å: Chain A: D.210, P.212, N.213, E.217 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.210, A:P.212, A:E.217, A:E.217 CA.16: 2 residues within 4Å: Chain A: E.102, E.169 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.102 CA.17: 4 residues within 4Å: Chain B: D.13, V.15, E.55, E.59 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.13, B:V.15, B:E.55, B:E.59 CA.18: 5 residues within 4Å: Chain B: E.91, E.105, D.107, E.240, E.243 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.91, B:E.91, B:E.105, B:D.107, B:E.240 CA.19: 3 residues within 4Å: Chain B: E.91, D.107, E.243 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.91, B:D.107, B:D.107, B:E.243 CA.20: 2 residues within 4Å: Chain A: D.290 Chain B: E.117 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:D.290, B:E.117 CA.21: 3 residues within 4Å: Chain B: T.189, E.194, T.207 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.189, B:T.189 CA.22: 4 residues within 4Å: Chain B: E.199, S.228, T.229, T.277 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.199, B:E.199, B:T.229, B:T.277 CA.23: 3 residues within 4Å: Chain B: D.210, P.212, E.217 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.210, B:E.217 CA.24: 3 residues within 4Å: Chain A: E.109, D.113 Chain B: D.113 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.113 CA.25: 4 residues within 4Å: Chain A: E.128 Chain B: D.259, D.261, E.330 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Metal complexes: A:E.128, A:E.128, B:D.259, B:D.259, B:D.261 CA.26: 4 residues within 4Å: Chain A: L.129, E.135 Chain B: D.261, E.331 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:E.135, A:E.135, B:D.261, B:E.331 CA.27: 5 residues within 4Å: Chain A: E.135 Chain B: D.261, E.264, E.331, L.333 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:E.264, B:E.331, A:E.135 CA.28: 2 residues within 4Å: Chain B: E.102, E.169 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.102, B:E.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lewis, K.M. et al., Characterization of Post-Translational Modifications to Calsequestrins of Cardiac and Skeletal Muscle. Int J Mol Sci (2016)

Release Date

2016-10-05

Peptides

Calsequestrin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Calsequestrin

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