SMTL ID : 5kn2.1 (1 other biounit)

Native bovine skeletal calsequestrin, high-Ca2+ form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: D.247, I.249, N.316, T.318, D.319, N.352, T.353, E.354 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 8 residues within 4Å: Chain B: D.247, I.249, N.316, T.318, D.319, N.352, T.353, E.354 No protein-ligand interaction detected (PLIP)

26 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.13, V.15, E.55, E.59 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.13, A:V.15, A:E.55, A:E.59 CA.3: 5 residues within 4Å: Chain A: E.91, S.94, E.105, D.107, E.240 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.91, A:E.105, A:D.107, A:E.240, H2O.1 CA.4: 4 residues within 4Å: Chain A: E.91, D.107, Y.239, E.243 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.91, A:D.107, A:D.107, A:E.243 CA.5: 3 residues within 4Å: Chain A: E.109, D.113 Chain B: D.113 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.113 CA.6: 3 residues within 4Å: Chain A: E.117 Chain B: D.290, D.291 No protein-ligand interaction detected (PLIP) CA.7: 3 residues within 4Å: Chain A: E.117, D.121 Chain B: D.290 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:D.121, A:D.121, B:D.290 CA.8: 4 residues within 4Å: Chain A: E.128 Chain B: D.259, D.261, E.330 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Metal complexes: A:E.128, B:D.259, B:D.259, B:D.261 CA.9: 5 residues within 4Å: Chain A: L.129, E.135 Chain B: P.260, D.261, E.331 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Metal complexes: A:E.135, B:D.261, B:E.331 CA.10: 6 residues within 4Å: Chain A: E.135 Chain B: D.261, E.264, E.330, E.331, L.333 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:E.135, B:E.264, B:E.331, H2O.1 CA.11: 3 residues within 4Å: Chain A: T.189, E.194, T.207 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.189, A:T.189 CA.12: 3 residues within 4Å: Chain A: E.199, T.229, T.277 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.199, A:E.199, A:T.229, A:T.277, A:T.277 CA.13: 4 residues within 4Å: Chain A: D.210, P.212, N.213, E.217 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.210, A:P.212, A:E.217, A:E.217 CA.14: 2 residues within 4Å: Chain A: E.102, E.169 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.102 CA.16: 4 residues within 4Å: Chain B: D.13, V.15, E.55, E.59 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.13, B:V.15, B:E.55, B:E.59 CA.17: 5 residues within 4Å: Chain B: E.91, S.94, E.105, D.107, E.240 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.91, B:E.105, B:D.107, B:E.240, H2O.1 CA.18: 4 residues within 4Å: Chain B: E.91, D.107, Y.239, E.243 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.91, B:D.107, B:D.107, B:E.243 CA.19: 3 residues within 4Å: Chain A: D.113 Chain B: E.109, D.113 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.113 CA.20: 3 residues within 4Å: Chain A: D.290, D.291 Chain B: E.117 No protein-ligand interaction detected (PLIP) CA.21: 3 residues within 4Å: Chain A: D.290 Chain B: E.117, D.121 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:D.121, B:D.121, A:D.290 CA.22: 4 residues within 4Å: Chain A: D.259, D.261, E.330 Chain B: E.128 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Metal complexes: B:E.128, A:D.259, A:D.259, A:D.261 CA.23: 5 residues within 4Å: Chain A: P.260, D.261, E.331 Chain B: L.129, E.135 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Metal complexes: B:E.135, A:D.261, A:E.331 CA.24: 6 residues within 4Å: Chain A: D.261, E.264, E.330, E.331, L.333 Chain B: E.135 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:E.135, A:E.264, A:E.331, H2O.1 CA.25: 3 residues within 4Å: Chain B: T.189, E.194, T.207 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.189, B:T.189 CA.26: 3 residues within 4Å: Chain B: E.199, T.229, T.277 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.199, B:E.199, B:T.229, B:T.277, B:T.277 CA.27: 4 residues within 4Å: Chain B: D.210, P.212, N.213, E.217 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.210, B:P.212, B:E.217, B:E.217 CA.28: 2 residues within 4Å: Chain B: E.102, E.169 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lewis, K.M. et al., Characterization of Post-Translational Modifications to Calsequestrins of Cardiac and Skeletal Muscle. Int J Mol Sci (2016)

Release Date

2016-10-05

Peptides

Calsequestrin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Calsequestrin

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