SMTL ID : 5kqx.1

Protease E35D-SQV

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

1 x ROC: (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide(Non-covalent)

ROC.1: 24 residues within 4Å: Chain A: N.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50, T.80, P.81, V.82, I.84 Chain B: R.8, L.23, N.25, G.27, V.32, I.47, G.48, G.49, I.50, P.81, I.84 22 PLIP interactions: 15 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:I.50, A:P.81, A:V.82, A:I.84, B:L.23, B:V.32, B:I.47, B:P.81, B:P.81, B:I.84 Hydrogen bonds: A:N.25, A:G.27, A:G.27, A:D.29, A:D.30, A:D.30, A:G.48, B:N.25 Water bridges: A:G.48, A:G.48, A:I.50, A:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z. et al., Effects of Hinge-region Natural Polymorphisms on Human Immunodeficiency Virus-Type 1 Protease Structure, Dynamics, and Drug Pressure Evolution. J.Biol.Chem. (2016)

Release Date

2016-09-21

Peptides

Protease E35D-SQV: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease E35D-SQV

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