SMTL ID : 5kqz.1

Protease E35D-CaP2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

1 x 0Q4: N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide(Non-covalent)

0Q4.1: 31 residues within 4Å: Chain A: R.8, L.23, N.25, G.27, A.28, D.29, K.45, M.46, I.47, G.48, G.49, I.50, F.53, P.81, V.82, I.84 Chain B: R.8, L.23, N.25, G.27, A.28, D.29, D.30, K.45, M.46, I.47, G.48, G.49, I.50, P.81, V.82 33 PLIP interactions: 15 interactions with chain A, 18 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:I.47, A:I.47, A:I.50, A:P.81, A:V.82, B:L.23, B:A.28, B:D.29, B:I.47, B:I.50, B:I.50, B:P.81, B:V.82 Hydrogen bonds: A:N.25, A:G.27, A:D.29, A:D.29, A:K.45, A:K.45, A:G.48, A:G.48, B:R.8, B:G.27, B:D.29, B:D.29, B:D.30, B:M.46, B:G.48, B:G.48 Water bridges: B:I.50, B:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z. et al., Effects of Hinge-region Natural Polymorphisms on Human Immunodeficiency Virus-Type 1 Protease Structure, Dynamics, and Drug Pressure Evolution. J.Biol.Chem. (2016)

Release Date

2016-09-21

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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