SMTL ID : 5l2n.1

Structure of ALDH1A1 in complex with BUC25

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x YB: YTTERBIUM (III) ION(Non-functional Binders)

YB.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) YB.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) YB.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) YB.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

4 x 6ZU: 3-benzyl-4-methyl-2-oxo-2H-1-benzopyran-7-yl methanesulfonate(Non-covalent)

6ZU.2: 13 residues within 4Å: Chain A: F.171, M.175, W.178, H.293, G.294, Y.297, C.302, C.303, I.304, Y.457, G.458, V.460, F.466 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.171, A:F.171, A:Y.297, A:V.460 pi-Stacking: A:W.178, A:Y.297, A:F.466 6ZU.5: 13 residues within 4Å: Chain B: F.171, M.175, W.178, H.293, G.294, Y.297, C.302, C.303, I.304, Y.457, G.458, V.460, F.466 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.171, B:F.171, B:Y.297, B:V.460 pi-Stacking: B:W.178, B:Y.297, B:F.466 6ZU.8: 13 residues within 4Å: Chain C: F.171, M.175, W.178, H.293, G.294, Y.297, C.302, C.303, I.304, Y.457, G.458, V.460, F.466 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:F.171, C:F.171, C:Y.297, C:V.460 pi-Stacking: C:W.178, C:Y.297, C:F.466 6ZU.11: 13 residues within 4Å: Chain D: F.171, M.175, W.178, H.293, G.294, Y.297, C.302, C.303, I.304, Y.457, G.458, V.460, F.466 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:F.171, D:F.171, D:Y.297, D:V.460 pi-Stacking: D:W.178, D:Y.297, D:F.466

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.143, T.155, H.157 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: R.143, T.155, H.157 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain C: R.143, T.155, H.157 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain D: R.143, T.155, H.157 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buchman, C.D. et al., Inhibition of the Aldehyde Dehydrogenase 1/2 Family by Psoralen and Coumarin Derivatives. J. Med. Chem. (2017)

Release Date

2017-03-08

Peptides

Retinal dehydrogenase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Retinal dehydrogenase 1

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