SMTL ID : 5lbq.1

LSD1-CoREST1 in complex with quinazoline-derivative reversible inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: G.163, S.164, G.165, V.166, S.167, L.185, E.186, A.187, R.188, G.192, G.193, R.194, V.195, L.207, G.208, A.209, M.210, V.211, T.466, A.467, V.468, T.502, L.503, P.504, V.515, L.537, W.629, W.634, S.638, Y.639, G.678, E.679, A.687, T.688, V.689, A.692 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.537, A:Y.639 Hydrogen bonds: A:S.164, A:V.166, A:S.167, A:S.167, A:S.167, A:A.187, A:R.188, A:G.192, A:R.194, A:M.210, A:V.211, A:V.211, A:V.468, A:V.468, A:E.679, A:V.689 Salt bridges: A:R.194, A:R.194 pi-Stacking: A:W.634

3 x 767: N2-(3-(dimethylamino)propyl)-6,7-dimethoxy-N4,N4-dimethylquinazoline-2,4-diamine(Non-covalent)

767.2: 9 residues within 4Å: Chain A: N.261, L.264, L.414, A.417, N.418, W.430, D.433, D.434 Ligands: 767.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.430 Hydrogen bonds: A:D.434 Salt bridges: A:D.433 767.3: 5 residues within 4Å: Chain A: S.268, D.434, E.437 Ligands: 767.2, 767.4 No protein-ligand interaction detected (PLIP) 767.4: 5 residues within 4Å: Chain A: Q.236, E.437, G.440, S.441 Ligands: 767.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.437

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Speranzini, V. et al., Polymyxins and quinazolines are LSD1/KDM1A inhibitors with unusual structural features. Sci Adv (2016)

Release Date

2016-09-21

Peptides

Lysine-specific histone demethylase 1A: A
REST corepressor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lysine-specific histone demethylase 1A

REST corepressor 1

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