SMTL ID : 5ldz.2 (1 other biounit)

Quadruple space group ambiguity due to rotational and translational non-crystallographic symmetry in human liver fructose-1,6-bisphosphatase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: E.98, D.119, D.122, E.281 Ligands: SO4.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.98, A:D.119, A:D.122, A:E.281, H2O.1 ZN.2: 2 residues within 4Å: Chain A: E.226, H.335 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.226, A:E.226, A:H.335, H2O.3 ZN.7: 4 residues within 4Å: Chain B: E.98, D.119, D.122, E.281 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.98, B:D.119, B:D.122, B:E.281, H2O.4 ZN.14: 5 residues within 4Å: Chain C: E.98, D.119, D.122, E.281 Ligands: SO4.16 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.98, C:D.119, C:D.122, C:E.281, H2O.7 ZN.15: 2 residues within 4Å: Chain C: E.226, H.335 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.226, C:E.226, C:H.335, H2O.10 ZN.20: 4 residues within 4Å: Chain D: E.98, D.119, D.122, E.281 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.98, D:D.119, D:D.122, D:E.281, H2O.10

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: D.122, G.123, S.124, S.125 Ligands: ZN.1 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: K.275, R.277, R.314 Ligand excluded by PLIP SO4.5: 6 residues within 4Å: Chain A: N.213, Y.216, Y.245, Y.265, K.275 Chain B: R.244 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain A: T.28, G.29, E.30, L.31, K.113, Y.114 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: D.122, G.123, S.124, S.125 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: K.275, R.277, R.314 Ligand excluded by PLIP SO4.10: 6 residues within 4Å: Chain A: R.244 Chain B: N.213, Y.216, Y.245, Y.265, K.275 Ligand excluded by PLIP SO4.11: 7 residues within 4Å: Chain B: G.27, T.28, G.29, E.30, L.31, K.113, Y.114 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain B: R.277, R.314 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain C: D.122, G.123, S.124, S.125 Ligands: ZN.14 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain C: K.275, R.277, R.314 Ligand excluded by PLIP SO4.18: 6 residues within 4Å: Chain C: N.213, Y.216, Y.245, Y.265, K.275 Chain D: R.244 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain C: T.28, G.29, E.30, L.31, K.113, Y.114 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain D: D.122, G.123, S.124, S.125 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain D: K.275, R.277, R.314 Ligand excluded by PLIP SO4.23: 6 residues within 4Å: Chain C: R.244 Chain D: N.213, Y.216, Y.245, Y.265, K.275 Ligand excluded by PLIP SO4.24: 7 residues within 4Å: Chain D: G.27, T.28, G.29, E.30, L.31, K.113, Y.114 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain D: R.277, R.314 Ligand excluded by PLIP

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.13: 1 residues within 4Å: Chain B: K.205 Ligand excluded by PLIP CL.26: 1 residues within 4Å: Chain D: K.205 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruf, A. et al., Quadruple space-group ambiguity owing to rotational and translational noncrystallographic symmetry in human liver fructose-1,6-bisphosphatase. Acta Crystallogr D Struct Biol (2016)

Release Date

2016-10-26

Peptides

Fructose-1,6-bisphosphatase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
E

D
F

Fructose-1,6-bisphosphatase 1

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