SMTL ID : 7cvn.1

The N-arylsulfonyl-indole-2-carboxamide-based inhibitors against fructose-1,6-bisphosphatase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-tetramer

Ligands

4 x GJO: 4-(3-acetamidophenyl)-N-(4-methoxyphenyl)sulfonyl-7-nitro-1H-indole-2-carboxamide(Non-covalent)

GJO.1: 19 residues within 4Å: Chain A: V.18, M.19, E.21, G.22, R.23, A.25, R.26, G.27, T.28, G.29, E.30, L.31, T.32, M.178 Chain C: R.26, G.27, T.28, G.29 Ligands: GJO.5 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:R.23, A:A.25, A:R.26, A:L.31, A:L.31 Hydrogen bonds: A:G.27, A:G.27, A:G.27, A:T.28, A:G.29, A:E.30, A:L.31, A:T.32, A:T.32, C:R.26 Water bridges: A:Y.114 GJO.3: 19 residues within 4Å: Chain B: V.18, M.19, E.21, G.22, R.23, A.25, R.26, G.27, T.28, G.29, E.30, L.31, T.32, M.178 Chain D: R.26, G.27, T.28, G.29 Ligands: GJO.7 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:V.18, B:R.23, B:A.25, B:R.26, B:L.31, B:L.31 Hydrogen bonds: B:G.27, B:G.27, B:G.27, B:T.28, B:G.29, B:E.30, B:L.31, B:T.32, B:T.32 GJO.5: 17 residues within 4Å: Chain A: R.26, G.27, T.28, G.29 Chain C: V.18, M.19, E.21, G.22, R.23, R.26, G.27, T.28, G.29, E.30, L.31, T.32 Ligands: GJO.1 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:R.23, C:R.26, C:L.31 Hydrogen bonds: C:G.27, C:G.27, C:G.27, C:T.28, C:G.29, C:E.30, C:L.31, C:T.32, C:T.32 GJO.7: 18 residues within 4Å: Chain B: G.27, T.28, G.29 Chain D: V.18, M.19, E.21, G.22, R.23, A.25, R.26, G.27, T.28, G.29, E.30, L.31, T.32, M.178 Ligands: GJO.3 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:A.25, D:R.26, D:L.31, D:L.31 Hydrogen bonds: D:G.27, D:G.27, D:G.27, D:T.28, D:G.29, D:L.31, D:T.32, D:T.32

4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FBP.2: 15 residues within 4Å: Chain A: D.122, G.123, S.124, S.125, N.213, Y.216, Y.245, G.247, S.248, M.249, Y.265, K.275, L.276, E.281 Chain B: R.244 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.122, A:D.122, A:G.123, A:S.124, A:S.125, A:S.125, A:N.213, A:Y.216, A:Y.245, A:M.249, A:Y.265, A:Y.265, A:K.275 Salt bridges: A:K.275, B:R.244 FBP.4: 16 residues within 4Å: Chain A: R.244 Chain B: D.122, G.123, S.124, S.125, N.213, Y.216, Y.245, G.247, S.248, M.249, Y.265, K.275, L.276, R.277, E.281 17 PLIP interactions: 15 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.122, B:G.123, B:S.125, B:S.125, B:N.213, B:Y.245, B:M.249, B:Y.265, B:K.275, B:R.277 Water bridges: B:D.75, B:S.124, B:V.250, A:R.244 Salt bridges: B:K.275, B:K.275, A:R.244 FBP.6: 14 residues within 4Å: Chain C: D.122, G.123, S.124, S.125, N.213, Y.216, Y.245, G.247, S.248, M.249, Y.265, K.275, L.276 Chain D: R.244 13 PLIP interactions: 10 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:D.122, C:G.123, C:S.125, C:S.125, C:N.213, C:Y.245, C:M.249, C:Y.265 Water bridges: C:S.124, D:R.244, D:R.244 Salt bridges: C:K.275, D:R.244 FBP.8: 15 residues within 4Å: Chain C: R.244 Chain D: D.122, G.123, S.124, S.125, N.213, Y.216, Y.245, G.247, S.248, M.249, Y.265, K.275, L.276, E.281 12 PLIP interactions: 11 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.122, D:D.122, D:G.123, D:S.125, D:N.213, D:Y.216, D:M.249, D:Y.265, D:K.275 Water bridges: D:E.281 Salt bridges: D:K.275, C:R.244

Links

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Citation

Bie, J. et al., Design,synthesis,biological evaluation and binding mode analysis of 7-nitro-indole-N-acylarylsulfonamide-based fructose-1,6-bisphosphatase inhibitors. Chinese journal of medicinal chemistry (2020)

Release Date

2020-09-23

Peptides

Fructose-1,6-bisphosphatase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Fructose-1,6-bisphosphatase 1

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