SMTL ID : 5lgu.1

Thieno[3,2-b]pyrrole-5-carboxamides as Novel Reversible Inhibitors of Histone Lysine Demethylase KDM1A/LSD1: Compound 34

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 39 residues within 4Å: Chain A: I.162, G.163, G.165, V.166, S.167, L.185, E.186, A.187, R.188, G.192, G.193, R.194, V.195, L.207, G.208, A.209, M.210, V.211, T.466, A.467, V.468, T.502, L.503, P.504, V.507, V.515, L.537, K.539, W.629, W.634, S.638, Y.639, G.678, E.679, A.687, T.688, V.689, A.692 Ligands: 6W1.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.165, A:S.167, A:S.167, A:A.187, A:R.188, A:R.188, A:G.192, A:R.194, A:A.209, A:M.210, A:V.211, A:V.211, A:V.468, A:V.468, A:E.679, A:A.687, A:V.689 Salt bridges: A:R.194, A:R.194 pi-Stacking: A:W.634, A:Y.639

1 x 6W1: 4-methyl-~{N}-[2-[[4-[[(3~{R})-pyrrolidin-3-yl]methoxy]phenoxy]methyl]phenyl]thieno[3,2-b]pyrrole-5-carboxamide(Non-covalent)

6W1.2: 11 residues within 4Å: Chain A: V.211, T.213, F.416, A.417, D.433, H.442, L.537, W.573, Y.639, A.687 Ligands: FAD.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.211, A:A.417, A:W.573, A:Y.639, A:A.687

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vianello, P. et al., Thieno[3,2-b]pyrrole-5-carboxamides as New Reversible Inhibitors of Histone Lysine Demethylase KDM1A/LSD1. Part 2: Structure-Based Drug Design and Structure-Activity Relationship. J. Med. Chem. (2017)

Release Date

2017-02-22

Peptides

Lysine-specific histone demethylase 1A: A
REST corepressor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lysine-specific histone demethylase 1A

REST corepressor 1

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