SMTL ID : 5liu.1

Crystal structure of human AKR1B10 complexed with NADP+ and the inhibitor IDD388

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.19, T.20, W.21, D.44, Y.49, K.78, H.111, S.160, N.161, Q.184, Y.210, S.211, P.212, L.213, G.214, S.215, P.216, D.217, L.229, A.246, I.261, P.262, K.263, S.264, V.265, T.266, R.269, E.272, N.273 Ligands: 388.2 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:W.21 Hydrogen bonds: A:T.20, A:W.21, A:D.44, A:D.44, A:Y.49, A:S.160, A:N.161, A:Q.184, A:S.211, A:L.213, A:G.214, A:S.215, A:S.215, A:S.264, A:V.265, A:T.266, A:T.266, A:E.272, A:N.273 Water bridges: A:D.217, A:A.246, A:R.269, A:R.269, A:R.269 Salt bridges: A:R.269 pi-Stacking: A:Y.210 pi-Cation interactions: A:R.269

1 x 388: (2-{[(4-BROMO-2-FLUOROBENZYL)AMINO]CARBONYL}-5-CHLOROPHENOXY)ACETIC ACID(Non-covalent)

388.2: 13 residues within 4Å: Chain A: W.21, V.48, Y.49, W.80, H.111, F.116, F.123, P.124, R.125, A.131, L.301, Q.303 Ligands: NAP.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.116, A:F.123, A:F.123 Water bridges: A:H.111 Salt bridges: A:H.111 pi-Stacking: A:F.123 Halogen bonds: A:P.124

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: V.5, H.201, T.206, N.257 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cousido-Siah, A. et al., IDD388 Polyhalogenated Derivatives as Probes for an Improved Structure-Based Selectivity of AKR1B10 Inhibitors. Acs Chem.Biol. (2016)

Release Date

2016-07-27

Peptides

Aldo-keto reductase family 1 member B10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Aldo-keto reductase family 1 member B10

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