SMTL ID : 5liw.1

Crystal structure of human AKR1B10 complexed with NADP+ and the inhibitor MK319

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.19, T.20, W.21, D.44, Y.49, K.78, H.111, S.160, N.161, Q.184, Y.210, S.211, P.212, L.213, G.214, S.215, P.216, D.217, L.229, A.246, I.261, P.262, K.263, S.264, V.265, T.266, R.269, E.272, N.273 Ligands: 1WX.2 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:T.20, A:W.21, A:D.44, A:S.160, A:N.161, A:Q.184, A:S.211, A:L.213, A:G.214, A:S.215, A:S.215, A:S.264, A:V.265, A:T.266, A:E.272, A:N.273 Water bridges: A:D.217, A:D.217, A:A.246, A:R.269, A:R.269, A:R.269 Salt bridges: A:R.269 pi-Stacking: A:Y.210 pi-Cation interactions: A:R.269

2 x 1WX: {2-[(4-bromo-2,3,5,6-tetrafluorobenzyl)carbamoyl]-5-chlorophenoxy}acetic acid(Non-covalent)

1WX.2: 15 residues within 4Å: Chain A: W.21, Y.49, W.80, H.111, W.112, F.116, N.161, Y.210, W.220, C.299, L.302, S.304, F.312 Ligands: NAP.1, 1WX.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.21, A:W.220, A:W.220, A:L.302 Hydrogen bonds: A:Y.49 Water bridges: A:L.301 Salt bridges: A:K.78, A:H.111 pi-Stacking: A:W.112 Halogen bonds: A:C.299 1WX.3: 11 residues within 4Å: Chain A: W.21, V.48, W.80, H.111, F.123, R.125, P.219, W.220, L.301, L.302 Ligands: 1WX.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.123, A:L.301 Hydrogen bonds: A:R.125, A:R.125

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: E.6, G.204, T.206 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cousido-Siah, A. et al., IDD388 Polyhalogenated Derivatives as Probes for an Improved Structure-Based Selectivity of AKR1B10 Inhibitors. Acs Chem.Biol. (2016)

Release Date

2016-07-27

Peptides

Aldo-keto reductase family 1 member B10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Aldo-keto reductase family 1 member B10

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